| GenBank top hits | e value | %identity | Alignment |
|---|
| AFP55537.1 retrotransposon polyprotein [Rosa rugosa] | 1.3e-40 | 31.62 | Show/hide |
Query: VPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRI-ESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFG-------N
VP D + +++ +G YET V A+ T + + LLL+ E R+ E A+G+ + + + R S S G +
Subjt: VPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRI-ESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFG-------N
Query: GRGRGRFNSSQG------------------RGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMP----------GAYLTQFNPSSQFFLGQNSGQMY---
RGRG F+ S+G G S+ + + QCQIC++ GH+ + C++R+ + A +PS + +L +
Subjt: GRGRGRFNSSQG------------------RGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMP----------GAYLTQFNPSSQFFLGQNSGQMY---
Query: --GKQFSP--MQAMTATPSFNQDS-LAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISVRLYKFNLSK-------PQHSIPSNANLAVFKSFNNSVS
G SP + + N DS L+I G + L S S+ FHLN++LH PS + NL+SV YKF + P + + S +
Subjt: --GKQFSP--MQAMTATPSFNQDS-LAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISVRLYKFNLSK-------PQHSIPSNANLAVFKSFNNSVS
Query: AVSESILPSNSIALLASVQSLNDK-SYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPS--YK-------LSRNGF--RVTCPYTAQQN
+ PS + + +S+ ++ + S + WH RLGH +IV +VL G+ N SFC +C +G S YK LS NG R +CP +QN
Subjt: AVSESILPSNSIALLASVQSLNDK-SYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPS--YK-------LSRNGF--RVTCPYTAQQN
Query: GIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
G+ ERKHRHIVD GLTLL+ + MP T+W D+F+T+V++IN+LPS VL ASP E+L R P Y SLKV
Subjt: GIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 5.0e-61 | 28.8 | Show/hide |
Query: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
+ T+SLL + N+E SS + Q GNKIS +KL ++ FLLWKF++ TALE ++LE + + +PP + + +E + S PNP YK+
Subjt: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
Query: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
WKR K V +DHI+YIL+GL
Subjt: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
Query: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
G++Y++M+ VI+A+ S +VQ+V++LLLT ES+ ESK + ++ LP+ N+ Q T+K E+ +Q+ S+ GRG S++GR G +
Subjt: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
Query: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
RNKPQCQIC K+G++ +C+ R P + + ++P+S N+ M AM A N DS
Subjt: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
Query: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
L I +G S S + F LNNLL VPSITKNLISV Y +L Q + N ++K N
Subjt: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
Query: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
++ V +++P ++ LL D+WH+RLGHP IV+ VL + N SG N ++FC ACA+ GP
Subjt: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
Query: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
+ +S NGF R+TCPYT++QN I+ERKHR+I+
Subjt: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
Query: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
++GLTLLSQ+++PL+FWD+AFSTSV+LIN+LP+ VL SP+EKL R+P++ SL+V
Subjt: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| KZV26181.1 hypothetical protein F511_06348 [Dorcoceras hygrometricum] | 7.8e-46 | 30.54 | Show/hide |
Query: TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRGRF
++P +D I++IL G+G EYE++V+ +T+++ S ++ +V ALLL E RIE+ + P+ N+T P+Q+ EN + Q Q GRGRGR
Subjt: TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRGRF
Query: NSSQGRGG-KSWNSRNKPQCQICNKIGHTTLKCYSRV------QMPGAYLT---QFNPSS-----QFFLGQNSGQMYGKQFSP-----------MQAMTA
GRGG K W++ +P CQIC GH CY R + G T QFN SS F S + + P + ++
Subjt: NSSQGRGG-KSWNSRNKPQCQICNKIGHTTLKCYSRV------QMPGAYLT---QFNPSS-----QFFLGQNSGQMYGKQFSP-----------MQAMTA
Query: TPSF---------NQDSLAINRFGYASLTS-PSNHVFHLNNLLHVPSITKNLISVR--------LYKFNLSKPQHSIPSNANLAVFKSFNNSV---SAVS
+ + N L+I+ G ++L PS+ F L NLLHVP ITKNLISV ++F+ S P+ + + + +N + + S
Subjt: TPSF---------NQDSLAINRFGYASLTS-PSNHVFHLNNLLHVPSITKNLISVR--------LYKFNLSKPQHSIPSNANLAVFKSFNNSV---SAVS
Query: ESILPSNSIALLASVQS-----------LNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAI--------------------------
P +S A L S S L + D WH RLGHP + V+QVL CN S N+NISFC++C +
Subjt: ESILPSNSIALLASVQS-----------LNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAI--------------------------
Query: -GPSYKLSRNG---------------------------------------------------------------------FRVTCPYTAQQNGIIERKHR
GP++ SRNG R +CPYT++QNG++ERKHR
Subjt: -GPSYKLSRNG---------------------------------------------------------------------FRVTCPYTAQQNGIIERKHR
Query: HIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
H+VD GL+LL+ +S+P FW+DAF ++V+LIN+LPS LG SP L R+PDY+ L+V
Subjt: HIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| RVW44519.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.2e-43 | 26.28 | Show/hide |
Query: SETNSEISSGNQVT------QAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGTSTVSKPNPHYKLWKRK--------
S+ ++E GN T I+P +++ T++L ++NFL+WK+++ A+ G+ LE + Q P + + G V PNP ++ ++R+
Subjt: SETNSEISSGNQVT------QAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGTSTVSKPNPHYKLWKRK--------
Query: --------------------------------------------TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSIN
+ DHI+ I+ GLG EYE+++ VI++K S ++Q V + L+ E RI K S N
Subjt: --------------------------------------------TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSIN
Query: ADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSF-GNGRGRGRFNSSQGRGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLG
V T+ + + P+ N S Q + F GN RG F ++GRG KPQCQ+CNK GHT +C+ R N + LG
Subjt: ADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSF-GNGRGRGRFNSSQGRGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLG
Query: QN-----SGQM--------------YGKQFSPMQAMTATP-----------------------------SFNQDS---------LAINRFGYASLTSPS-
SG + + +S M+AM ATP +N +S L I+ G + S S
Subjt: QN-----SGQM--------------YGKQFSPMQAMTATP-----------------------------SFNQDS---------LAINRFGYASLTSPS-
Query: -NHVFHLNNLLHVPSITKNLISVR------------------------------------LYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSESILPSN
N V L N+L VP+I KNL+SV LY+FNLSK S +L+ K N ++ + S++ ++
Subjt: -NHVFHLNNLLHVPSITKNLISVR------------------------------------LYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSESILPSN
Query: SIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPSYKL--------------------------------------
+ S + +D+WH+RLGHP IV QVL FS S C+AC +G S+ L
Subjt: SIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPSYKL--------------------------------------
Query: --------------------------------------------------------SRNGF--RVTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLT
+NG R++CP+T++QNGIIERKHRHIV++GLTLL+Q+S+PL
Subjt: --------------------------------------------------------SRNGF--RVTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLT
Query: FWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
+W DAFST+VFLIN+LP+ VL P E L +P+Y+ LKV
Subjt: FWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 5.0e-61 | 28.8 | Show/hide |
Query: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
+ T+SLL + N+E SS + Q GNKIS +KL ++ FLLWKF++ TALE ++LE + + +PP + + +E + S PNP YK+
Subjt: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
Query: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
WKR K V +DHI+YIL+GL
Subjt: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
Query: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
G++Y++M+ VI+A+ S +VQ+V++LLLT ES+ ESK + ++ LP+ N+ Q T+K E+ +Q+ S+ GRG S++GR G +
Subjt: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
Query: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
RNKPQCQIC K+G++ +C+ R P + + ++P+S N+ M AM A N DS
Subjt: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
Query: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
L I +G S S + F LNNLL VPSITKNLISV Y +L Q + N ++K N
Subjt: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
Query: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
++ V +++P ++ LL D+WH+RLGHP IV+ VL + N SG N ++FC ACA+ GP
Subjt: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
Query: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
+ +S NGF R+TCPYT++QN I+ERKHR+I+
Subjt: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
Query: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
++GLTLLSQ+++PL+FWD+AFSTSV+LIN+LP+ VL SP+EKL R+P++ SL+V
Subjt: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2Z7AWA7 Integrase catalytic domain-containing protein | 3.8e-46 | 30.54 | Show/hide |
Query: TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRGRF
++P +D I++IL G+G EYE++V+ +T+++ S ++ +V ALLL E RIE+ + P+ N+T P+Q+ EN + Q Q GRGRGR
Subjt: TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRGRF
Query: NSSQGRGG-KSWNSRNKPQCQICNKIGHTTLKCYSRV------QMPGAYLT---QFNPSS-----QFFLGQNSGQMYGKQFSP-----------MQAMTA
GRGG K W++ +P CQIC GH CY R + G T QFN SS F S + + P + ++
Subjt: NSSQGRGG-KSWNSRNKPQCQICNKIGHTTLKCYSRV------QMPGAYLT---QFNPSS-----QFFLGQNSGQMYGKQFSP-----------MQAMTA
Query: TPSF---------NQDSLAINRFGYASLTS-PSNHVFHLNNLLHVPSITKNLISVR--------LYKFNLSKPQHSIPSNANLAVFKSFNNSV---SAVS
+ + N L+I+ G ++L PS+ F L NLLHVP ITKNLISV ++F+ S P+ + + + +N + + S
Subjt: TPSF---------NQDSLAINRFGYASLTS-PSNHVFHLNNLLHVPSITKNLISVR--------LYKFNLSKPQHSIPSNANLAVFKSFNNSV---SAVS
Query: ESILPSNSIALLASVQS-----------LNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAI--------------------------
P +S A L S S L + D WH RLGHP + V+QVL CN S N+NISFC++C +
Subjt: ESILPSNSIALLASVQS-----------LNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAI--------------------------
Query: -GPSYKLSRNG---------------------------------------------------------------------FRVTCPYTAQQNGIIERKHR
GP++ SRNG R +CPYT++QNG++ERKHR
Subjt: -GPSYKLSRNG---------------------------------------------------------------------FRVTCPYTAQQNGIIERKHR
Query: HIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
H+VD GL+LL+ +S+P FW+DAF ++V+LIN+LPS LG SP L R+PDY+ L+V
Subjt: HIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| A0A438EA49 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.0e-44 | 26.28 | Show/hide |
Query: SETNSEISSGNQVT------QAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGTSTVSKPNPHYKLWKRK--------
S+ ++E GN T I+P +++ T++L ++NFL+WK+++ A+ G+ LE + Q P + + G V PNP ++ ++R+
Subjt: SETNSEISSGNQVT------QAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGTSTVSKPNPHYKLWKRK--------
Query: --------------------------------------------TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSIN
+ DHI+ I+ GLG EYE+++ VI++K S ++Q V + L+ E RI K S N
Subjt: --------------------------------------------TVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSIN
Query: ADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSF-GNGRGRGRFNSSQGRGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLG
V T+ + + P+ N S Q + F GN RG F ++GRG KPQCQ+CNK GHT +C+ R N + LG
Subjt: ADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSF-GNGRGRGRFNSSQGRGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLG
Query: QN-----SGQM--------------YGKQFSPMQAMTATP-----------------------------SFNQDS---------LAINRFGYASLTSPS-
SG + + +S M+AM ATP +N +S L I+ G + S S
Subjt: QN-----SGQM--------------YGKQFSPMQAMTATP-----------------------------SFNQDS---------LAINRFGYASLTSPS-
Query: -NHVFHLNNLLHVPSITKNLISVR------------------------------------LYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSESILPSN
N V L N+L VP+I KNL+SV LY+FNLSK S +L+ K N ++ + S++ ++
Subjt: -NHVFHLNNLLHVPSITKNLISVR------------------------------------LYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSESILPSN
Query: SIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPSYKL--------------------------------------
+ S + +D+WH+RLGHP IV QVL FS S C+AC +G S+ L
Subjt: SIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPSYKL--------------------------------------
Query: --------------------------------------------------------SRNGF--RVTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLT
+NG R++CP+T++QNGIIERKHRHIV++GLTLL+Q+S+PL
Subjt: --------------------------------------------------------SRNGF--RVTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLT
Query: FWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
+W DAFST+VFLIN+LP+ VL P E L +P+Y+ LKV
Subjt: FWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-61 | 28.8 | Show/hide |
Query: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
+ T+SLL + N+E SS + Q GNKIS +KL ++ FLLWKF++ TALE ++LE + + +PP + + +E + S PNP YK+
Subjt: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
Query: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
WKR K V +DHI+YIL+GL
Subjt: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
Query: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
G++Y++M+ VI+A+ S +VQ+V++LLLT ES+ ESK + ++ LP+ N+ Q T+K E+ +Q+ S+ GRG S++GR G +
Subjt: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
Query: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
RNKPQCQIC K+G++ +C+ R P + + ++P+S N+ M AM A N DS
Subjt: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
Query: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
L I +G S S + F LNNLL VPSITKNLISV Y +L Q + N ++K N
Subjt: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
Query: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
++ V +++P ++ LL D+WH+RLGHP IV+ VL + N SG N ++FC ACA+ GP
Subjt: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
Query: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
+ +S NGF R+TCPYT++QN I+ERKHR+I+
Subjt: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
Query: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
++GLTLLSQ+++PL+FWD+AFSTSV+LIN+LP+ VL SP+EKL R+P++ SL+V
Subjt: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.4e-61 | 28.8 | Show/hide |
Query: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
+ T+SLL + N+E SS + Q GNKIS +KL ++ FLLWKF++ TALE ++LE + + +PP + + +E + S PNP YK+
Subjt: LKGTTSLLSLIWQYGFSETNSEISSGNQVTQAINPGNKISTIKLTEENFLLWKFEVFTALEGHELEEHIGEDCQPPLEKIQVSEGT--STVSKPNPHYKL
Query: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
WKR K V +DHI+YIL+GL
Subjt: WKR---------------------------------------------------------------------------------KTVPVEDHIMYILSGL
Query: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
G++Y++M+ VI+A+ S +VQ+V++LLLT ES+ ESK + ++ LP+ N+ Q T+K E+ +Q+ S+ GRG S++GR G +
Subjt: GAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQS--QQQQSFGNGRGRGRFNSSQGRGGKSWNS
Query: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
RNKPQCQIC K+G++ +C+ R P + + ++P+S N+ M AM A N DS
Subjt: RNKPQCQICNKIGHTTLKCYSRVQMPGAYLTQFNPSSQFFLGQNSGQMYGKQFSPMQAMTATPSFNQDS-------------------------------
Query: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
L I +G S S + F LNNLL VPSITKNLISV Y +L Q + N ++K N
Subjt: -------LAINRFGYASLTSPS--NHVFHLNNLLHVPSITKNLISVR----------------LYKFNLSKPQHSIPSNANLAVFK-----------SFN
Query: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
++ V +++P ++ LL D+WH+RLGHP IV+ VL + N SG N ++FC ACA+ GP
Subjt: NSVSAVSESILPSNSIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNEN-ISFCNACAI---------------------------GP
Query: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
+ +S NGF R+TCPYT++QN I+ERKHR+I+
Subjt: SYKLSRNGF---------------------------------------------------------------------RVTCPYTAQQNGIIERKHRHIV
Query: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
++GLTLLSQ+++PL+FWD+AFSTSV+LIN+LP+ VL SP+EKL R+P++ SL+V
Subjt: DVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| J7G0P5 Retrotransposon polyprotein | 6.2e-41 | 31.62 | Show/hide |
Query: VPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRI-ESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFG-------N
VP D + +++ +G YET V A+ T + + LLL+ E R+ E A+G+ + + + R S S G +
Subjt: VPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRI-ESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFG-------N
Query: GRGRGRFNSSQG------------------RGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMP----------GAYLTQFNPSSQFFLGQNSGQMY---
RGRG F+ S+G G S+ + + QCQIC++ GH+ + C++R+ + A +PS + +L +
Subjt: GRGRGRFNSSQG------------------RGGKSWNSRNKPQCQICNKIGHTTLKCYSRVQMP----------GAYLTQFNPSSQFFLGQNSGQMY---
Query: --GKQFSP--MQAMTATPSFNQDS-LAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISVRLYKFNLSK-------PQHSIPSNANLAVFKSFNNSVS
G SP + + N DS L+I G + L S S+ FHLN++LH PS + NL+SV YKF + P + + S +
Subjt: --GKQFSP--MQAMTATPSFNQDS-LAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISVRLYKFNLSK-------PQHSIPSNANLAVFKSFNNSVS
Query: AVSESILPSNSIALLASVQSLNDK-SYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPS--YK-------LSRNGF--RVTCPYTAQQN
+ PS + + +S+ ++ + S + WH RLGH +IV +VL G+ N SFC +C +G S YK LS NG R +CP +QN
Subjt: AVSESILPSNSIALLASVQSLNDK-SYDIWHQRLGHPIFSIVEQVLQKCNPNFSGNENISFCNACAIGPS--YK-------LSRNGF--RVTCPYTAQQN
Query: GIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
G+ ERKHRHIVD GLTLL+ + MP T+W D+F+T+V++IN+LPS VL ASP E+L R P Y SLKV
Subjt: GIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 4.8e-06 | 32.93 | Show/hide |
Query: FRVTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPS--IVLGGASPMEKLLQRQPDYTSLKV
+ +T P+T Q NG+ ER R I + T++S + + +FW +A T+ +LIN++PS +V +P E ++P L+V
Subjt: FRVTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPS--IVLGGASPMEKLLQRQPDYTSLKV
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.5e-07 | 36.36 | Show/hide |
Query: TCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
T P T Q NG+ ER +R IV+ ++L + +P +FW +A T+ +LIN+ PS+ L P ++ Y+ LKV
Subjt: TCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLTFWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.2e-19 | 24.03 | Show/hide |
Query: KTVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRGR
K + ++ + +L L EY+ ++ I AK T+ ++ LL ES+I + SS V+P + + N N +++ + + N
Subjt: KTVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLPTANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRGR
Query: FNSSQGRGGKSWNSRNKP---QCQICNKIGHTTLKCYS--------RVQMPGAYLTQFNPSSQFFLGQ---------NSGQMYG-----KQFSPMQAMTA
+ S + N+++KP +CQIC GH+ +C Q P + T + P + LG +SG + S Q T
Subjt: FNSSQGRGGKSWNSRNKP---QCQICNKIGHTTLKCYS--------RVQMPGAYLTQFNPSSQFFLGQ---------NSGQMYG-----KQFSPMQAMTA
Query: TPSF---NQDSLAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISV-RLYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSES---------ILPSNS
+ ++ I+ G SL++ S + +L+N+L+VP+I KNLISV RL N P++ + K N V + I S
Subjt: TPSF---NQDSLAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISV-RLYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSES---------ILPSNS
Query: IALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPN-FSGNENISFCNACAIGPSYK--------------------------LSRNGFR------
++L AS S ++ WH RLGHP SI+ V+ + + + + C+ C I S K LS + +R
Subjt: IALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCNPN-FSGNENISFCNACAIGPSYK--------------------------LSRNGFR------
Query: ---------------------------------------------------------------VTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLTF
+ P+T + NG+ ERKHRHIV+ GLTLLS +S+P T+
Subjt: ---------------------------------------------------------------VTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLTF
Query: WDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
W AF+ +V+LIN+LP+ +L SP +KL P+Y L+V
Subjt: WDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.3e-21 | 23.8 | Show/hide |
Query: KTVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLP-TANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRG
K + ++ + +L L +Y+ ++ I AK ++ ++ L+ ES++ ++N+ V+P TAN+ T ++ RN + +++ N R
Subjt: KTVPVEDHIMYILSGLGAEYETMVLVITAKIGSQTVQDVIALLLTDESRIESKSSINADGVLP-TANLTIQNPTQKDIENLRNVSQSQQQQSFGNGRGRG
Query: RFNSSQGRGGKSWNSRNKP---QCQICNKIGHTTLKCYSRVQ-----------------MPGAYLTQFNP--SSQFFLGQNSGQMYGKQFS------PMQ
G +S N + KP +CQIC+ GH+ +C Q P A L +P ++ + L + F+ P
Subjt: RFNSSQGRGGKSWNSRNKP---QCQICNKIGHTTLKCYSRVQ-----------------MPGAYLTQFNP--SSQFFLGQNSGQMYGKQFS------PMQ
Query: AMTATPSFNQDSLAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISV-RLYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSES---------ILPSN
+ ++ I G ASL + S+ LN +L+VP+I KNLISV RL N + P++ + K N V + I S
Subjt: AMTATPSFNQDSLAINRFGYASLTSPSNHVFHLNNLLHVPSITKNLISV-RLYKFNLSKPQHSIPSNANLAVFKSFNNSVSAVSES---------ILPSN
Query: SIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCN-PNFSGNENISFCNACAIGPSYK--------------------------------------
++++ AS + ++ WH RLGHP +I+ V+ + P + + + C+ C I S+K
Subjt: SIALLASVQSLNDKSYDIWHQRLGHPIFSIVEQVLQKCN-PNFSGNENISFCNACAIGPSYK--------------------------------------
Query: -------------------------------------------------------LSRNGFR--VTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLT
LS++G + P+T + NG+ ERKHRHIV++GLTLLS +S+P T
Subjt: -------------------------------------------------------LSRNGFR--VTCPYTAQQNGIIERKHRHIVDVGLTLLSQSSMPLT
Query: FWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
+W AFS +V+LIN+LP+ +L SP +KL + P+Y LKV
Subjt: FWDDAFSTSVFLINKLPSIVLGGASPMEKLLQRQPDYTSLKV
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