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Lag0022127 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022127
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr7:19024628..19025208
RNA-Seq ExpressionLag0022127
SyntenyLag0022127
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TVU42476.1 hypothetical protein EJB05_08883, partial [Eragrostis curvula]3.5e-0845.9Show/hide
Query:  DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC
        + S G  LRI++++DI   + RGV + +D+   G W P++YE LP+FC  CGIIGH+ K+C
Subjt:  DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]9.7e-1144.3Show/hide
Query:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASLPVKDLGLVSSVSLGVSRAP
        G+ LR+R+R D+   L RG+K+ LD  +GG WIPIQYE+LP F ++CG + H+ KDC+         V SVS  +   P
Subjt:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASLPVKDLGLVSSVSLGVSRAP

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.2e-1461.02Show/hide
Query:  SLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC
        S GASLRIR+ +DI+  L+RG+KI +D  +GG WIPIQYE+LP FC++CG+IGH   DC
Subjt:  SLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-1059.18Show/hide
Query:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGI
        G++LR+R+ +DIS  L+RG+K+ LD  IGG+WIPIQYE+LP FC++CG+
Subjt:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGI

XP_035546596.1 uncharacterized protein LOC118348645 [Juglans regia]4.5e-0850Show/hide
Query:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCA
        G  LR+++ +D+S  L RG  I + DA   SWIP +YEKLP FC+YCGI+ H H  C+
Subjt:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCA

TrEMBL top hitse value%identityAlignment
A0A6J1BSZ1 uncharacterized protein LOC1110054814.7e-1144.3Show/hide
Query:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASLPVKDLGLVSSVSLGVSRAP
        G+ LR+R+R D+   L RG+K+ LD  +GG WIPIQYE+LP F ++CG + H+ KDC+         V SVS  +   P
Subjt:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASLPVKDLGLVSSVSLGVSRAP

A0A6J1DU55 uncharacterized protein LOC1110231351.6e-1461.02Show/hide
Query:  SLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC
        S GASLRIR+ +DI+  L+RG+KI +D  +GG WIPIQYE+LP FC++CG+IGH   DC
Subjt:  SLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-1059.18Show/hide
Query:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGI
        G++LR+R+ +DIS  L+RG+K+ LD  IGG+WIPIQYE+LP FC++CG+
Subjt:  GASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGI

K3ZNG2 CCHC-type domain-containing protein2.8e-1147.54Show/hide
Query:  DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC
        D++ G  LR+++R+DI   L+RG+ + L + +G  W P+QYE LP+FC+ CGIIGH+ K C
Subjt:  DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC

K4AML8 CCHC-type domain-containing protein3.6e-1147.54Show/hide
Query:  DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC
        D++ G  LR+++R+DI   L+RG+ + L + +G  W P+QYE LP+FC+ CGIIGH  K C
Subjt:  DISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGTTGATATTTCACTGGGGGCGAGCTTGAGGATTCGAATTCGGGTGGATATTTCATGGTCGTTGCAACGTGGAGTGAAGATTACCCTGGATGATGCTATTGGAGG
GAGCTGGATTCCTATACAATACGAGAAATTGCCGAAGTTCTGCTTCTACTGTGGTATTATTGGACATTTGCATAAAGACTGTGCTAGCCTTCCGGTGAAGGATTTAGGAT
TGGTTTCAAGCGTTTCCCTGGGAGTCAGTCGAGCACCAGTGGTTATGCGGAGGTTTGATTCTCTAGTTTCGAGTCTTTCTCCTAGATTTTCTATCTCTGATTCAACTGAA
CTTGGGTCTGGCTGTCATCCGATGTTGGCAAGGGGATCCAATGTTTCTGATCAGAGTGCTGCGTGGTATTCGCTCTCCGGAGGCCCTCATCCCTTCGACAAAGGGAAAGC
CAAGCTGACTGACCCTTTCTCTAGACCAGCCATGGCTGGTTGGGTGGCGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGTTGATATTTCACTGGGGGCGAGCTTGAGGATTCGAATTCGGGTGGATATTTCATGGTCGTTGCAACGTGGAGTGAAGATTACCCTGGATGATGCTATTGGAGG
GAGCTGGATTCCTATACAATACGAGAAATTGCCGAAGTTCTGCTTCTACTGTGGTATTATTGGACATTTGCATAAAGACTGTGCTAGCCTTCCGGTGAAGGATTTAGGAT
TGGTTTCAAGCGTTTCCCTGGGAGTCAGTCGAGCACCAGTGGTTATGCGGAGGTTTGATTCTCTAGTTTCGAGTCTTTCTCCTAGATTTTCTATCTCTGATTCAACTGAA
CTTGGGTCTGGCTGTCATCCGATGTTGGCAAGGGGATCCAATGTTTCTGATCAGAGTGCTGCGTGGTATTCGCTCTCCGGAGGCCCTCATCCCTTCGACAAAGGGAAAGC
CAAGCTGACTGACCCTTTCTCTAGACCAGCCATGGCTGGTTGGGTGGCGTTGTAA
Protein sequenceShow/hide protein sequence
MYVDISLGASLRIRIRVDISWSLQRGVKITLDDAIGGSWIPIQYEKLPKFCFYCGIIGHLHKDCASLPVKDLGLVSSVSLGVSRAPVVMRRFDSLVSSLSPRFSISDSTE
LGSGCHPMLARGSNVSDQSAAWYSLSGGPHPFDKGKAKLTDPFSRPAMAGWVAL