; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022161 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022161
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr7:19882200..19883837
RNA-Seq ExpressionLag0022161
SyntenyLag0022161
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR026960 - Reverse transcriptase zinc-binding domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]2.7e-3828.39Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPI-SGSTLDNLIWHYDRRGEYSVKS
        ++K G+R  +G G+ + ++KD WIPRP TF+ +SP    +E  VVA  I    +W VD+L    M++D+E I ++ + SG   D ++WH+D++GEYSVKS
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPI-SGSTLDNLIWHYDRRGEYSVKS

Query:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDI
        G++L++ Q       S    +  WK  W   +P KVK F+W++  N +PT  N           C  C+ ++ET  H +  C+ AR+IW+ LAP  ++  
Subjt:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDI

Query:  WSHLN-----IQDLWLNLVERKGINFDLLCVGAWAIWNDRNNLIHN--------------------RQVPNP-NVRRIIEQGED-----------MIMHS
          H       IQ++W      +    +L+ V  W IW+ RN  I                      ++V  P NV    ++G D           + ++ 
Subjt:  WSHLN-----IQDLWLNLVERKGINFDLLCVGAWAIWNDRNNLIHN--------------------RQVPNP-NVRRIIEQGED-----------MIMHS

Query:  DATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF
        DA        +G+  ++RD  G +  V    A         EA  +  GL++A ++S   L + SD   ++ ++N      + I   L D++   K F
Subjt:  DATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF

XP_017250619.1 PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]1.8e-4226.21Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISG-STLDNLIWHYDRRGEYSVKS
        LL  G+R+ +G+GQ+ + FKDPW+ RP +F  L       E++ V  +IT    W+ + +    +  D+++I  +P+S     D+  WHY+ +G Y+VKS
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISG-STLDNLIWHYDRRGEYSVKS

Query:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDI
        G+KL     +  S SS++V+  WWK  W  K+P K+  F W+ Y+  +PT        + ++ NCP+C    ++  HA+FWC  A+E+W ++    L   
Subjt:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDI

Query:  WSHLNIQDLWLNLVE-RKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP-------------------NVRRIIEQGEDMIMHS------------DATFR
           ++ +D+ L + E  +  + D++ +  W IW +RN LIH ++   P                   +  R I +G+ +  H             DA   
Subjt:  WSHLNIQDLWLNLVE-RKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP-------------------NVRRIIEQGEDMIMHS------------DATFR

Query:  DDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF
         +   +G+   +   +               S L  EA  L+ GL+ A+        +L+DS SL++ +N E    + +   + D +++ + F
Subjt:  DDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.8e-5133Show/hide
Query:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVK
        DLL  G+R  +G+G  I+ F DPW+PRP TFK L    +G  D  VA FIT    WDV  +SH    +D ++I  +PIS   L D+ +WHYD+RG YSV+
Subjt:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVK

Query:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPG----
        SG+KL +  +  A+ +S       W  +WK  VP K+K F+W+S +  IPT  N L   +     C +C +  E+ +HA F C+RAR+IW  L P     
Subjt:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPG----

Query:  ELEDIWSHLNIQDLWLNLVER-KGINFDLLCVGAWAIWNDRNNLIHNRQV----------------------------PNPNVRRIIE-----QGEDMIM
          ED   +++  +LW +L E+ +  + +L  +  W IWNDRN+LIH +QV                               N R +++         + +
Subjt:  ELEDIWSHLNIQDLWLNLVER-KGINFDLLCVGAWAIWNDRNNLIHNRQV----------------------------PNPNVRRIIE-----QGEDMIM

Query:  HSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF
        ++DA  R    S G   ++RD   +L        P   S L  E   +LEGL+ A   +   L + SDSL  I++I  EI+        + +IQ +   F
Subjt:  HSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF

XP_024172304.2 uncharacterized protein LOC112178381 [Rosa chinensis]1.6e-3829.14Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITP-SLQWDVDKLSHFLMRDDVEMIQRLPIS-GSTLDNLIWHYDRRGEYSVK
        LL+ G+R  +GSG  I ++ DPWIPRP +F+  S    G ED+ VA  I P S  W VD L      D+V++I+++P+S  +  D LIWH+D+RG YSVK
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITP-SLQWDVDKLSHFLMRDDVEMIQRLPIS-GSTLDNLIWHYDRRGEYSVK

Query:  SGFKLSIMQRQGASLSSDEVVAN------WWKKMWKGKVPNKVKHFVWKSYNNSIPTMVN-----SLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREI
        SG+ ++   R  ASLSS    +N       W+++W  +V  KV++FVW+   N +PT VN     +LD  +     CP C+ E ETT+H    C     +
Subjt:  SGFKLSIMQRQGASLSSDEVVAN------WWKKMWKGKVPNKVKHFVWKSYNNSIPTMVN-----SLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREI

Query:  WNILAPGELEDIWSHLNIQDLWLNLVE-RKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP------------------------------NVRRIIEQGE
        W   + G      +  ++++  L++++       D+  +  WAIW++RN L+ N    NP                                + +     
Subjt:  WNILAPGELEDIWSHLNIQDLWLNLVE-RKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP------------------------------NVRRIIEQGE

Query:  DMIMHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDI
         + ++ D  ++ ++   GI +V+RD  G     +    P   SA   EA     GL +A     K++ + +D   L   +N ++  +S +S  L D ++ 
Subjt:  DMIMHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDI

Query:  QKSFD
           FD
Subjt:  QKSFD

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]5.0e-4030.5Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKL-SHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVK
        ++K G+R  +G+G+ I +F D W+PRP TF+ + P  S     VVA  I    QWD  KL  HFL  D  E++ ++P+      D ++WHYD+RG YSVK
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKL-SHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVK

Query:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELED
        SG++L++  +   S S  E    +W  +W  ++P K+K F+W++ NN +P+  N     V     C  C+  +ET  HA+  C+ AR+IW + +P     
Subjt:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELED

Query:  IWSHLNIQDLWLNL----VERKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP---------------NVRR---------IIEQGEDMI--------MHS
        +    N QD++  L     E +  + +L+    W+ W  RN  I + +  NP                VR+         I E+ ++ +        ++ 
Subjt:  IWSHLNIQDLWLNL----VERKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP---------------NVRR---------IIEQGEDMI--------MHS

Query:  DATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSFDK
        DA F    +S G+  V+RD +G +            SA   EA  +L GL+LA+   V  L I SD L +++++N      S I  T+  IQ+  K F K
Subjt:  DATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSFDK

TrEMBL top hitse value%identityAlignment
A0A6J1DX30 uncharacterized protein LOC1110248741.4e-5133Show/hide
Query:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVK
        DLL  G+R  +G+G  I+ F DPW+PRP TFK L    +G  D  VA FIT    WDV  +SH    +D ++I  +PIS   L D+ +WHYD+RG YSV+
Subjt:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVK

Query:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPG----
        SG+KL +  +  A+ +S       W  +WK  VP K+K F+W+S +  IPT  N L   +     C +C +  E+ +HA F C+RAR+IW  L P     
Subjt:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPG----

Query:  ELEDIWSHLNIQDLWLNLVER-KGINFDLLCVGAWAIWNDRNNLIHNRQV----------------------------PNPNVRRIIE-----QGEDMIM
          ED   +++  +LW +L E+ +  + +L  +  W IWNDRN+LIH +QV                               N R +++         + +
Subjt:  ELEDIWSHLNIQDLWLNLVER-KGINFDLLCVGAWAIWNDRNNLIHNRQV----------------------------PNPNVRRIIE-----QGEDMIM

Query:  HSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF
        ++DA  R    S G   ++RD   +L        P   S L  E   +LEGL+ A   +   L + SDSL  I++I  EI+        + +IQ +   F
Subjt:  HSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQDIQKSF

A0A803PEK8 Uncharacterized protein3.3e-3733.6Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVKS
        ++  G R  +G+G+ +++ +DPW+ RP+TFK+        E++ VA       +WD + +      +D E+I   P +G  L D ++WHY + GEY+VKS
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDRRGEYSVKS

Query:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQ-EEMETTVHAIFWCERAREIWNILAPGELED
        G+K++         S D++  +WWK +W  K+P K+KHFVWK   N IPT  N     V ++  C  C    +ETT HA++ C+R++E+W   A   L+D
Subjt:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQ-EEMETTVHAIFWCERAREIWNILAPGELED

Query:  IWSHLNIQDLWLNLVERKGI----NFDLLCVGAWAIWNDRNNLIHNRQVP
            +  +DL   L+    +     F+   V  W IWN RNN++H  + P
Subjt:  IWSHLNIQDLWLNLVERKGI----NFDLLCVGAWAIWNDRNNLIHNRQVP

A0A803Q185 Uncharacterized protein1.6e-3629.3Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTLDN-LIWHYDRRGEYSVKS
        L+  G R  +G G  I++ +DPW+PRP+TFK+        E + V         WD   +S    +DD EMI  LP SG  LD+ ++WHY + GEYSVKS
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTLDN-LIWHYDRRGEYSVKS

Query:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQ-EEMETTVHAIFWCERAREIWNILAPGELED
        G++++   +     S D +   WW+K+W+ K+P K+K FVWK  +  +PT       HV     C  C     ET  HA++ C++++  W  L   +LE 
Subjt:  GFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQ-EEMETTVHAIFWCERAREIWNILAPGELED

Query:  IWSHLNIQDL----WLNLVERKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP-----------------------------NVRRIIEQGEDMIMHSDAT
        I  H    +L     L+ V  K   F++  V  W++WN RN   H+  VP P                              V ++   GE  I + DA+
Subjt:  IWSHLNIQDL----WLNLVERKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP-----------------------------NVRRIIEQGEDMIMHSDAT

Query:  FRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIIN
         +      G+  V+R   G++     T+     S L  E   +L+G+++  +  ++  +I  D L  I++I+
Subjt:  FRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIIN

A0A803Q8J4 Uncharacterized protein1.5e-3728.72Show/hide
Query:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGST-LDNLIWHYDRRGEYSVK
        +LLK GIRK +G+G +I    DPWIP  L F  +    SGN + VVA +ITP  +W+  KLS      DV  I  LP+S +   D  IWH    GEY VK
Subjt:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGST-LDNLIWHYDRRGEYSVK

Query:  SGFKLSIMQRQGASLSSDEVVAN----WWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPG
        SG+  +      +S  ++E V+N    WWK  W+ K+P KVK F WK+ +N++P            + +C +C    E+  HA+F C+ AR +W +    
Subjt:  SGFKLSIMQRQGASLSSDEVVAN----WWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPG

Query:  ELEDIWSHLNIQDLWLNLVER-KGINFDLLCVGAWAIWNDRNNLIHNRQVPNPNVRRIIEQGEDMI----------------------------------
                +NI+D    + E       + +    W+IW+DRNN+IH +    P V  I  + ++ +                                  
Subjt:  ELEDIWSHLNIQDLWLNLVER-KGINFDLLCVGAWAIWNDRNNLIHNRQVPNPNVRRIIEQGEDMI----------------------------------

Query:  --MHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQ
          ++ DA F +    +G   ++RD +GN+          C      EA  L   L+ A++L+ K   + +DSL L   +       S     ++D+Q
Subjt:  --MHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCISTTLWDIQ

A0A803QG02 Uncharacterized protein3.3e-3727.32Show/hide
Query:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPIS-GSTLDNLIWHYDRRGEYSVK
        DLL  G+R  +G+G +++   DPW+P   +F+  + C  G+ D  + ++IT   QWD++ L     + D++ I  L IS  S  D LIWH+   G Y+VK
Subjt:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPIS-GSTLDNLIWHYDRRGEYSVK

Query:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELED
        SG+ L++   +    S+ ++   WW ++W  K+P KVK F W+  N+++PT VN +   + V  +C +C    E++ HA+F+C RA+++W++        
Subjt:  SGFKLSIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELED

Query:  IWSHLNIQDLWLNL--VERKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP---------------------------------NVRRIIEQGE-------
        + S +N  +++ ++  V++  +   +LC+  W IW +RN  IH  + P P                                 N      QG        
Subjt:  IWSHLNIQDLWLNL--VERKGINFDLLCVGAWAIWNDRNNLIHNRQVPNP---------------------------------NVRRIIEQGE-------

Query:  -------DMIMHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIIN
                  ++ D  F D+   +GI  V+RD  G++            S    EAT LL  L+ A +L ++   I ++SL     IN
Subjt:  -------DMIMHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIIN

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.4e-1323.89Show/hide
Query:  DLLKGGIRKNLGSGQAIQLFKDPWIP-RPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQR--LPISGSTLDNLIWHYDRRGEYS
        D++  G+    G GQ I+ + D W+  +PL         +  + +V      P   WD  K+  +   +    ++   L +     D L W + + G++S
Subjt:  DLLKGGIRKNLGSGQAIQLFKDPWIP-RPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQR--LPISGSTLDNLIWHYDRRGEYS

Query:  VKSGFKLSIMQRQGASLSSDEV----VANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILA
        V+S +++         L+ DEV    +A+++  +WK +VP +VK F+W   N ++ T       H+  +  C VC+  +E+ +H +  C     IW  + 
Subjt:  VKSGFKLSIMQRQGASLSSDEV----VANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILA

Query:  PGELED-IWSHLNIQDLWLNLVERKG
        P   +   +S    + L+ NL +R G
Subjt:  PGELED-IWSHLNIQDLWLNLVERKG

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein1.4e-1927.55Show/hide
Query:  LLKGGIRKNLGSGQAIQLFKDPWI----PRPL----TFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDR
        LLK G R  +G GQ I++  D  +    PRPL    T+K ++   +   +   +Y+      WD  K+S F+ + D   I R+ ++ S   D +IW+Y+ 
Subjt:  LLKGGIRKNLGSGQAIQLFKDPWI----PRPL----TFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTL-DNLIWHYDR

Query:  RGEYSVKSGFKLSIMQRQG--ASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWN
         GEY+V+SG+ L          +++      +   ++W   +  K+KHF+W++ + ++ T        + ++ +CP C  E E+  HA+F C  A   W 
Subjt:  RGEYSVKSGFKLSIMQRQG--ASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWN

Query:  I----LAPGELEDIWSHLNIQDLWLNLVERKGIN--FDLLCVG-AWAIWNDRNNLIHNRQVPNPN
        +    L   +L       NI ++ LN V+   ++    LL V   W IW  RNN++ N+   +P+
Subjt:  I----LAPGELEDIWSHLNIQDLWLNLVERKGIN--FDLLCVG-AWAIWNDRNNLIHNRQVPNPN

AT3G25270.1 Ribonuclease H-like superfamily protein2.2e-0928.46Show/hide
Query:  KMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDIWSHLNIQ---DLWLN--LVERKGIN
        K+WK K   K+KHF+WK  + ++ T  N    H+  +  C  C +E ET+ H  F C  A+++W        E   + + ++   +L L+  L  R+   
Subjt:  KMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDIWSHLNIQ---DLWLN--LVERKGIN

Query:  FDLLCVGAWAIWNDRNNLIHNRQ
        F+L     W +W  RN L+  ++
Subjt:  FDLLCVGAWAIWNDRNNLIHNRQ

AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.5e-0530.77Show/hide
Query:  NWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAR
        NW   +W  K+  K+K  +WK+ NN++P     L  ++ +   C  C+ + ET  H +F C  A+
Subjt:  NWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAR

AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-2022.46Show/hide
Query:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVL-------SPCASGNEDIVVAYFITPS-LQWDVDKLSHFLMRDDVEMIQRL-PISGSTLDNLIWHYD
        ++L+ G R  +G+G+ I +++  W+        L          AS +  + V+  I  S  +W  D +       + ++I  L P     LD+  W Y 
Subjt:  DLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVL-------SPCASGNEDIVVAYFITPS-LQWDVDKLSHFLMRDDVEMIQRL-PISGSTLDNLIWHYD

Query:  RRGEYSVKSGFKL---SIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREI
          G+Y+VKSG+ +    I +R      S+  +   ++K+WK +   K++HF+WK  +NS+P        H+     C  C    ET  H +F C  AR  
Subjt:  RRGEYSVKSGFKL---SIMQRQGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREI

Query:  WNILA-PGELEDIWS-HLNIQDLWLNLVERKGINFD----LLCVGAWAIWNDRNNLIHNRQVPNPNVRRIIEQGEDMI----------------------
        W I + P  L   W+  + +   W+  +      ++    L+    W +W +RN L+   +    N + ++ + ED +                      
Subjt:  WNILA-PGELEDIWS-HLNIQDLWLNLVERKGINFD----LLCVGAWAIWNDRNNLIHNRQVPNPNVRRIIEQGEDMI----------------------

Query:  -------------MHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCI
                      ++DAT+  D    GI  VLR+  G +  +   + P   S L  E   +   +          +   SDS  LI I+N +    S +
Subjt:  -------------MHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSDSLSLIRIINGEIYCDSCI

Query:  STTLWDIQDIQKSF
          T+ D+Q +   F
Subjt:  STTLWDIQDIQKSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTCTCAAAGGAGGAATAAGGAAAAATTTAGGGAGTGGTCAGGCCATACAGCTTTTCAAAGACCCATGGATTCCCCGACCCTTAACCTTTAAGGTGCTCTCTCC
GTGCGCTTCTGGAAACGAGGACATAGTAGTTGCATATTTCATTACTCCGTCTTTGCAATGGGATGTGGATAAACTCAGTCATTTTCTGATGAGGGACGATGTAGAAATGA
TCCAACGCCTGCCGATTAGTGGCTCTACGTTGGATAACTTGATATGGCATTATGATAGAAGAGGTGAATATTCTGTTAAGAGCGGCTTTAAGTTAAGTATAATGCAAAGA
CAAGGAGCTTCTTTGTCCTCTGATGAAGTGGTGGCCAATTGGTGGAAGAAGATGTGGAAAGGGAAGGTTCCTAATAAGGTTAAGCACTTTGTATGGAAATCCTACAATAA
CTCAATTCCAACTATGGTCAACTCGTTGGATCATCATGTCCCGGTTAATGGGAATTGTCCGGTTTGTCAAGAGGAGATGGAGACTACCGTACATGCCATATTCTGGTGTG
AACGGGCTAGGGAGATTTGGAATATTTTGGCCCCGGGTGAGCTTGAGGATATTTGGAGCCATTTGAATATACAGGACCTGTGGCTGAATTTGGTAGAAAGGAAGGGGATC
AATTTTGATCTACTTTGTGTTGGTGCTTGGGCGATATGGAATGATAGGAATAACTTGATTCATAATCGCCAAGTTCCCAACCCAAACGTTCGCAGAATTATCGAGCAAGG
TGAAGACATGATTATGCACTCTGATGCTACTTTTCGGGATGATAAGGTATCTATGGGAATCAACATTGTTTTGCGGGATTTGCATGGTAATCTTCATGAGGTGAAGCAAA
CTTCGGCTCCTCCGTGTTCTTCAGCTTTGGGGACAGAAGCAACAATGCTGCTGGAAGGACTTCGGTTGGCAAAGGAGCTGAGTGTGAAGCGGCTTACAATCTTGTCAGAT
TCTCTTTCCTTAATCAGGATAATCAATGGGGAGATCTACTGTGATTCATGTATATCCACGACCCTGTGGGATATTCAAGATATTCAAAAATCCTTCGATAAGGGGGCCAT
TTGGCCCAAGGGTTTGGAATGGGTTGGCATGGATTGGAAAGGGATGTCCATGTATGGTTGGCTTGGAATGGTGTGGGTTTGGAATGAAATGGTGGCCATGTGGATTCCAA
CTCATTCCCACATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTCTCAAAGGAGGAATAAGGAAAAATTTAGGGAGTGGTCAGGCCATACAGCTTTTCAAAGACCCATGGATTCCCCGACCCTTAACCTTTAAGGTGCTCTCTCC
GTGCGCTTCTGGAAACGAGGACATAGTAGTTGCATATTTCATTACTCCGTCTTTGCAATGGGATGTGGATAAACTCAGTCATTTTCTGATGAGGGACGATGTAGAAATGA
TCCAACGCCTGCCGATTAGTGGCTCTACGTTGGATAACTTGATATGGCATTATGATAGAAGAGGTGAATATTCTGTTAAGAGCGGCTTTAAGTTAAGTATAATGCAAAGA
CAAGGAGCTTCTTTGTCCTCTGATGAAGTGGTGGCCAATTGGTGGAAGAAGATGTGGAAAGGGAAGGTTCCTAATAAGGTTAAGCACTTTGTATGGAAATCCTACAATAA
CTCAATTCCAACTATGGTCAACTCGTTGGATCATCATGTCCCGGTTAATGGGAATTGTCCGGTTTGTCAAGAGGAGATGGAGACTACCGTACATGCCATATTCTGGTGTG
AACGGGCTAGGGAGATTTGGAATATTTTGGCCCCGGGTGAGCTTGAGGATATTTGGAGCCATTTGAATATACAGGACCTGTGGCTGAATTTGGTAGAAAGGAAGGGGATC
AATTTTGATCTACTTTGTGTTGGTGCTTGGGCGATATGGAATGATAGGAATAACTTGATTCATAATCGCCAAGTTCCCAACCCAAACGTTCGCAGAATTATCGAGCAAGG
TGAAGACATGATTATGCACTCTGATGCTACTTTTCGGGATGATAAGGTATCTATGGGAATCAACATTGTTTTGCGGGATTTGCATGGTAATCTTCATGAGGTGAAGCAAA
CTTCGGCTCCTCCGTGTTCTTCAGCTTTGGGGACAGAAGCAACAATGCTGCTGGAAGGACTTCGGTTGGCAAAGGAGCTGAGTGTGAAGCGGCTTACAATCTTGTCAGAT
TCTCTTTCCTTAATCAGGATAATCAATGGGGAGATCTACTGTGATTCATGTATATCCACGACCCTGTGGGATATTCAAGATATTCAAAAATCCTTCGATAAGGGGGCCAT
TTGGCCCAAGGGTTTGGAATGGGTTGGCATGGATTGGAAAGGGATGTCCATGTATGGTTGGCTTGGAATGGTGTGGGTTTGGAATGAAATGGTGGCCATGTGGATTCCAA
CTCATTCCCACATTTAG
Protein sequenceShow/hide protein sequence
MDLLKGGIRKNLGSGQAIQLFKDPWIPRPLTFKVLSPCASGNEDIVVAYFITPSLQWDVDKLSHFLMRDDVEMIQRLPISGSTLDNLIWHYDRRGEYSVKSGFKLSIMQR
QGASLSSDEVVANWWKKMWKGKVPNKVKHFVWKSYNNSIPTMVNSLDHHVPVNGNCPVCQEEMETTVHAIFWCERAREIWNILAPGELEDIWSHLNIQDLWLNLVERKGI
NFDLLCVGAWAIWNDRNNLIHNRQVPNPNVRRIIEQGEDMIMHSDATFRDDKVSMGINIVLRDLHGNLHEVKQTSAPPCSSALGTEATMLLEGLRLAKELSVKRLTILSD
SLSLIRIINGEIYCDSCISTTLWDIQDIQKSFDKGAIWPKGLEWVGMDWKGMSMYGWLGMVWVWNEMVAMWIPTHSHI