; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022219 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022219
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr7:21367549..21381741
RNA-Seq ExpressionLag0022219
SyntenyLag0022219
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043583.1 putative Integrase core domain [Cucumis melo var. makuwa]2.3e-1857.58Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPYA--VGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PYA  VG + +V +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPYA--VGIVTWVRVANTP
KAA0050451.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-1855.45Show/hide
Query:  KELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANT
        K LAT FQ++  E     LG ++ RNRKNK LA+SQ SYI KML RYKMQNS KG LP+++GI LSK+ +PKTPQEVE M  +PY  AVG + +  +   
Subjt:  KELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANT

Query:  P
        P
Subjt:  P
KAA0059556.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-1856.57Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PY  AVG + +  +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
KAA0062926.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-1857.58Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PY  AVG + +V +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
TYK16417.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-1857.58Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PY  AVG + +V +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
TrEMBL top hitse value%identityAlignment
A0A5A7TJH9 Putative Integrase core domain1.1e-1857.58Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPYA--VGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PYA  VG + +V +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPYA--VGIVTWVRVANTP
A0A5A7UA90 Gag/pol protein1.1e-1855.45Show/hide
Query:  KELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANT
        K LAT FQ++  E     LG ++ RNRKNK LA+SQ SYI KML RYKMQNS KG LP+++GI LSK+ +PKTPQEVE M  +PY  AVG + +  +   
Subjt:  KELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANT

Query:  P
        P
Subjt:  P
A0A5A7UZF3 Gag/pol protein1.9e-1856.57Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PY  AVG + +  +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
A0A5A7V901 Gag/pol protein5.1e-1957.58Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PY  AVG + +V +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
A0A5D3CWZ1 Gag/pol protein5.1e-1957.58Show/hide
Query:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
        LA  FQ++   +    LG ++ R+RKNK LALSQ +YI KMLVRY MQNS KG LPFRHG+ LSK+  PKTPQEVE MRR+PY  AVG + +V +   P
Subjt:  LATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGIVTWVRVANTP
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-0734.55Show/hide
Query:  DEVILLTLK-ELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGI
        D+ ++  LK +L+  F ++        LG K+ R R +++L LSQ  YI ++L R+ M+N+   S P    + LSKKM P T +E   M ++PY  AVG 
Subjt:  DEVILLTLK-ELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLVRYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPY--AVGI

Query:  VTWVRVANTP
        + +  V   P
Subjt:  VTWVRVANTP
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCAGTCTTATGCAAACTCATTGCATAGGATACCCCCGCTTGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTACCAAATACAAAATGGGTCGTATCA
CATAGTGTTACCAGGAGAAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAG
AAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGAGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGAGCA
ATCAAGAAAGGCGTTCTTGAAGAATTCAGAGTCGTCAACGAAGCCCTAAGAAAAGTGGTCCGGTTCGAGCAGGATGGGCGCGGTTCGTGGAATATTGACCGGTTTGCCTT
GGTTCAACTGTTTATGGGCCGGTTCAAGTACTTTTGCAGCTGGTTCAAGGTGTTTTGGAGCTGTTTTAGCACGGTTCAGCCTATATTTTTGCCGGTTCGAAGGGTTTGGA
CGCGGTTCGAGACTGTTTTGAGCTGGTTCACGGCAGGATATGACTTTAATAGATTGATTAATGGAACTCCACCGGTAAAGTTCTGTCTAAGGCTGGGGGTATTTAAACTG
ACGGTTTACGGAACATCTCCTACCTGGGAACTGACCTGGAATACCGGAGTTGAATTAATCATAGCTAAATGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCAT
AGGATTCGGAACATCATTTGTTTCAAGAAAGGGAGTTGACATTTGTTTAGCTTTACTGGGAAGTAACCTAAATGTTTTAAGACTAATCAAGAGTAAAGCAGTCATGAACA
CTGAGACTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGAAAATACCTTTCTTTGGTTCTAAGTGTTGACTGCATTGCATACTGTAGTAGACAACCC
CAAAGGAAACAAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCGACAAATGCTAAATTCTCAGAAGAAGTTCACATCAAAAATCATAAACCACAA
GAGTAAAGTCGGTTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTATCTTACTGACATTAAAGGAGCTAGCAACTCATTTCCAAG
TGGAAATTTGGGAGAAGCTGAGTTTGTTCTTGGGATCCAAATTGTTTAGGAACCGTAAGAACAAAAGGCTAGCCTTGTCTCAGGTGTCTTATATCTACAAGATGTTAGTT
AGATATAAGATGCAGAATTCCAATAAGGGTTCACTACCTTTCAGACATGGAATTCTTTTGTCTAAGAAAATGTTTCCTAAGACACCTCAAGAGGTTGAGGGCATGAGACG
AATGCCCTATGCAGTAGGGATTGTCACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAA
CACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGAGGTTGTTCATTAGAGGAGCGCTGAGTTATAGCGGGGAAGATCAAATGGTG
GTGTTCTTCATTGTTGCAGAGCAATCAAGAAAGGCGTTCTTGAAGAATTCAGAGTCGTCAACTAAGATCCATTTGCAACCTATAGGTTTACCCATCAAGGAGATCTACAG
ATCCCAGAGAGAATTGAAACACACAGATTCCATTTCTAGTTCAGCTGAACAGAAGTTAACTCCCTTTCTTGAAATGAACTGTGTTAGCAGGGAAAGATCTCAGAGGCACG
CACCAACAGGCTACCGAAGAGAAAGACAATTGTTGGTGATTAACCAAAGTGACCTTATCCATTTCTGGAGTTCACAGTGTTCTGAAACCTATGGTCGGCCCTTCGAAGGG
ATGGTCGCACCAGGACAACACGCAGATGGATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCAGTCTTATGCAAACTCATTGCATAGGATACCCCCGCTTGCATGTCTACTACATGGACGCTTTGGATCAATACGTCTGTACCAAATACAAAATGGGTCGTATCA
CATAGTGTTACCAGGAGAAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAG
AAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGAGGTTGTTCATTAGAGGAGCGCTGGTACTTAAGGAGACAGATGTAACACAGGGAGCA
ATCAAGAAAGGCGTTCTTGAAGAATTCAGAGTCGTCAACGAAGCCCTAAGAAAAGTGGTCCGGTTCGAGCAGGATGGGCGCGGTTCGTGGAATATTGACCGGTTTGCCTT
GGTTCAACTGTTTATGGGCCGGTTCAAGTACTTTTGCAGCTGGTTCAAGGTGTTTTGGAGCTGTTTTAGCACGGTTCAGCCTATATTTTTGCCGGTTCGAAGGGTTTGGA
CGCGGTTCGAGACTGTTTTGAGCTGGTTCACGGCAGGATATGACTTTAATAGATTGATTAATGGAACTCCACCGGTAAAGTTCTGTCTAAGGCTGGGGGTATTTAAACTG
ACGGTTTACGGAACATCTCCTACCTGGGAACTGACCTGGAATACCGGAGTTGAATTAATCATAGCTAAATGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCAT
AGGATTCGGAACATCATTTGTTTCAAGAAAGGGAGTTGACATTTGTTTAGCTTTACTGGGAAGTAACCTAAATGTTTTAAGACTAATCAAGAGTAAAGCAGTCATGAACA
CTGAGACTGCTACTACTCAATGTGAAAAGAGGCAAAGGATTTCTCCTAAAGGAAAATACCTTTCTTTGGTTCTAAGTGTTGACTGCATTGCATACTGTAGTAGACAACCC
CAAAGGAAACAAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCGACAAATGCTAAATTCTCAGAAGAAGTTCACATCAAAAATCATAAACCACAA
GAGTAAAGTCGGTTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTATCTTACTGACATTAAAGGAGCTAGCAACTCATTTCCAAG
TGGAAATTTGGGAGAAGCTGAGTTTGTTCTTGGGATCCAAATTGTTTAGGAACCGTAAGAACAAAAGGCTAGCCTTGTCTCAGGTGTCTTATATCTACAAGATGTTAGTT
AGATATAAGATGCAGAATTCCAATAAGGGTTCACTACCTTTCAGACATGGAATTCTTTTGTCTAAGAAAATGTTTCCTAAGACACCTCAAGAGGTTGAGGGCATGAGACG
AATGCCCTATGCAGTAGGGATTGTCACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAA
CACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTCCCTTAAGAGGTTGTTCATTAGAGGAGCGCTGAGTTATAGCGGGGAAGATCAAATGGTG
GTGTTCTTCATTGTTGCAGAGCAATCAAGAAAGGCGTTCTTGAAGAATTCAGAGTCGTCAACTAAGATCCATTTGCAACCTATAGGTTTACCCATCAAGGAGATCTACAG
ATCCCAGAGAGAATTGAAACACACAGATTCCATTTCTAGTTCAGCTGAACAGAAGTTAACTCCCTTTCTTGAAATGAACTGTGTTAGCAGGGAAAGATCTCAGAGGCACG
CACCAACAGGCTACCGAAGAGAAAGACAATTGTTGGTGATTAACCAAAGTGACCTTATCCATTTCTGGAGTTCACAGTGTTCTGAAACCTATGGTCGGCCCTTCGAAGGG
ATGGTCGCACCAGGACAACACGCAGATGGATCATAA
Protein sequenceShow/hide protein sequence
MVQSYANSLHRIPPLACLLHGRFGSIRLYQIQNGSYHIVLPGEAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALVLKETDVTQGA
IKKGVLEEFRVVNEALRKVVRFEQDGRGSWNIDRFALVQLFMGRFKYFCSWFKVFWSCFSTVQPIFLPVRRVWTRFETVLSWFTAGYDFNRLINGTPPVKFCLRLGVFKL
TVYGTSPTWELTWNTGVELIIAKCCPGATIPSEGLIIGFGTSFVSRKGVDICLALLGSNLNVLRLIKSKAVMNTETATTQCEKRQRISPKGKYLSLVLSVDCIAYCSRQP
QRKQEVDTSSIHKRIKNLYRQMLNSQKKFTSKIINHKSKVGLSKLTNEATVTSTRVVDEVILLTLKELATHFQVEIWEKLSLFLGSKLFRNRKNKRLALSQVSYIYKMLV
RYKMQNSNKGSLPFRHGILLSKKMFPKTPQEVEGMRRMPYAVGIVTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECSLKRLFIRGALSYSGEDQMV
VFFIVAEQSRKAFLKNSESSTKIHLQPIGLPIKEIYRSQRELKHTDSISSSAEQKLTPFLEMNCVSRERSQRHAPTGYRRERQLLVINQSDLIHFWSSQCSETYGRPFEG
MVAPGQHADGS