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Lag0022244 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022244
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr7:21885085..21886161
RNA-Seq ExpressionLag0022244
SyntenyLag0022244
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI64686.1 hypothetical protein CRG98_014902, partial [Punica granatum]3.0e-0450.98Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECG
        + D+ AS H+   R  F+S+T G +G VRMGNG++ K  GIGDV L+TE G
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECG

RVW64630.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.3e-0436.67Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTEC---------GVAKLKFRSQVVAVGHRKSTLYRCQLNVAKG
        ++D+ +S HI + R  F+S+T G  G VRMGN    +  G+GDV L+T           G  KL   S V+A G + +TLY+ +  + KG
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTEC---------GVAKLKFRSQVVAVGHRKSTLYRCQLNVAKG

RVW84651.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.7e-0446.15Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGVAKLKFRSQVVAVGHRKSTLYRCQLNV
        ++DS AS+H A+ +  FTS+T G  G VRMGN  ++K  G+GDV L  E  + KL   S VVA G + S+LY  Q  V
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGVAKLKFRSQVVAVGHRKSTLYRCQLNV

XP_022152155.1 cinnamoyl-CoA reductase-like SNL6 [Momordica charantia]1.3e-0438.93Show/hide
Query:  VVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQLRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKW
        VVA GH++S +Y  +  VAKGS RQ M    A GS R    PAA +AK DQ +      KQLRS     E + G+R  +  VR   EL KS  R+ A   
Subjt:  VVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQLRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKW

Query:  MARAVAKVKGQVSSLVTGLNRGLKPFSECIF
              K  G +SS+ T L+   K   E  F
Subjt:  MARAVAKVKGQVSSLVTGLNRGLKPFSECIF

XP_022157059.1 uncharacterized protein LOC111023870 [Momordica charantia]3.2e-0636.47Show/hide
Query:  MGNGRTSKTRGIGDVSLKTECGVAKL--------KFRSQVVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQ
        MGNG  SK RGIGDV LKT  GV  +         FR  +++VG       + +     GS RQ M   A D S R    P   +A+ DQ +   +  KQ
Subjt:  MGNGRTSKTRGIGDVSLKTECGVAKL--------KFRSQVVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQ

Query:  LRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKWMARAVAKVKGQVSSLVTGLNRGLKPFSECIF
        LRS     E + G++  +  VRRS EL KS  R+ A K          G VSS+VT L    K   E  F
Subjt:  LRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKWMARAVAKVKGQVSSLVTGLNRGLKPFSECIF

TrEMBL top hitse value%identityAlignment
A0A2I0KAB7 Uncharacterized protein (Fragment)1.4e-0450.98Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECG
        + D+ AS H+   R  F+S+T G +G VRMGNG++ K  GIGDV L+TE G
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECG

A0A438FXE6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0436.67Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTEC---------GVAKLKFRSQVVAVGHRKSTLYRCQLNVAKG
        ++D+ +S HI + R  F+S+T G  G VRMGN    +  G+GDV L+T           G  KL   S V+A G + +TLY+ +  + KG
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTEC---------GVAKLKFRSQVVAVGHRKSTLYRCQLNVAKG

A0A438HJM1 Retrovirus-related Pol polyprotein from transposon TNT 1-948.4e-0546.15Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGVAKLKFRSQVVAVGHRKSTLYRCQLNV
        ++DS AS+H A+ +  FTS+T G  G VRMGN  ++K  G+GDV L  E  + KL   S VVA G + S+LY  Q  V
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGVAKLKFRSQVVAVGHRKSTLYRCQLNV

A0A6J1DD48 cinnamoyl-CoA reductase-like SNL66.4e-0538.93Show/hide
Query:  VVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQLRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKW
        VVA GH++S +Y  +  VAKGS RQ M    A GS R    PAA +AK DQ +      KQLRS     E + G+R  +  VR   EL KS  R+ A   
Subjt:  VVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQLRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKW

Query:  MARAVAKVKGQVSSLVTGLNRGLKPFSECIF
              K  G +SS+ T L+   K   E  F
Subjt:  MARAVAKVKGQVSSLVTGLNRGLKPFSECIF

A0A6J1DVE9 uncharacterized protein LOC1110238701.5e-0636.47Show/hide
Query:  MGNGRTSKTRGIGDVSLKTECGVAKL--------KFRSQVVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQ
        MGNG  SK RGIGDV LKT  GV  +         FR  +++VG       + +     GS RQ M   A D S R    P   +A+ DQ +   +  KQ
Subjt:  MGNGRTSKTRGIGDVSLKTECGVAKL--------KFRSQVVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCRGTVEPAARIAKFDQFDQDPSVQKQ

Query:  LRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKWMARAVAKVKGQVSSLVTGLNRGLKPFSECIF
        LRS     E + G++  +  VRRS EL KS  R+ A K          G VSS+VT L    K   E  F
Subjt:  LRSP---GEKVDGYR-ESPVVRRSNELEKSLTRVEASKWMARAVAKVKGQVSSLVTGLNRGLKPFSECIF

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-0445.1Show/hide
Query:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECG
        ++D+AAS H    R LF  +  G  G V+MGN   SK  GIGD+ +KT  G
Subjt:  ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAGAATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCA
TCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGTCGCCAAACTCAAGTTCAGATCCCAGG
TAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAGAGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTAGTTGTAGA
GGTACAGTTGAGCCAGCAGCAAGGATAGCCAAGTTCGATCAGTTCGATCAAGATCCTTCAGTTCAGAAACAATTGAGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGA
ATCCCCAGTTGTCAGACGGTCGAATGAATTGGAGAAGTCGCTTACGCGAGTTGAGGCATCAAAGTGGATGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCT
TGGTAACAGGTTTGAATAGAGGACTCAAGCCATTCTCAGAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTATTTTTTGGGCCTTGGAGTTT
ACCAAGATGATCAGAGATAACAGTTGTAGTGGGAGTAGAGCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATTGTTGTTTTGTCTCCAAGT
GGAAAATTGTTGGTTGTGGAGGCAAAACGCATTCCCTCCATTTGTCGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAGAATATTAGACAGTGCAGCTTCTGTTCACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGGCA
TCATGGCCTAGTGAGGATGGGGAATGGTAGAACCTCCAAGACTAGAGGGATTGGAGATGTTAGTCTGAAGACAGAATGTGGAGTCGCCAAACTCAAGTTCAGATCCCAGG
TAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAGATGTCAGTTGAATGTTGCCAAAGGTTCAGAGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTAGTTGTAGA
GGTACAGTTGAGCCAGCAGCAAGGATAGCCAAGTTCGATCAGTTCGATCAAGATCCTTCAGTTCAGAAACAATTGAGAAGTCCAGGAGAGAAAGTTGATGGCTATCGTGA
ATCCCCAGTTGTCAGACGGTCGAATGAATTGGAGAAGTCGCTTACGCGAGTTGAGGCATCAAAGTGGATGGCCAGGGCAGTTGCTAAGGTCAAAGGTCAGGTCTCTAGCT
TGGTAACAGGTTTGAATAGAGGACTCAAGCCATTCTCAGAGTGTATCTTCTTCAGGAACAGTTGTTCGGGTTGGAAGAAGATGACAGGTATTTTTTGGGCCTTGGAGTTT
ACCAAGATGATCAGAGATAACAGTTGTAGTGGGAGTAGAGCCTTGGAGTTTGCCAAGATGTTTAGAGTTTTGTTGCAGTGGGAGACGAGATTGTTGTTTTGTCTCCAAGT
GGAAAATTGTTGGTTGTGGAGGCAAAACGCATTCCCTCCATTTGTCGTGTGA
Protein sequenceShow/hide protein sequence
MRFRCVGTFIPFRILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTRGIGDVSLKTECGVAKLKFRSQVVAVGHRKSTLYRCQLNVAKGSERQWMSVKAADGSCR
GTVEPAARIAKFDQFDQDPSVQKQLRSPGEKVDGYRESPVVRRSNELEKSLTRVEASKWMARAVAKVKGQVSSLVTGLNRGLKPFSECIFFRNSCSGWKKMTGIFWALEF
TKMIRDNSCSGSRALEFAKMFRVLLQWETRLLFCLQVENCWLWRQNAFPPFVV