CuGenDBv2

Gene ID	Lag0022252
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon protein
Genome location	chr7:22118081..22118640
RNA-Seq Expression	Lag0022252
Synteny	Lag0022252
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031841.1 retrotransposon protein [Cucumis melo var. makuwa]

1.7e-24

49.52

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Query:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARG
        +++++  +H+WT EE+  + +CL+ LV +GGW  DNGT         GFGWN+E KCI AEKE+FD WV  HP AKGL N+PFT++NEL  VF ++ A G
Subjt:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARG

Query:  VRAES
          AE+
Subjt:  VRAES

KAA0052286.1 retrotransposon protein [Cucumis melo var. makuwa]

9.3e-23

44.83

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Query:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT--------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNEL
        +++++  +H+WT EE+  L +CL+ LV +GGW  DNGT                    GFGWN+E KCI AEKE+FD WV  HP AKGL N+PF +++EL
Subjt:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT--------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNEL

Query:  ALVFRKDNARGVRAES
          VF +D A G  AE+
Subjt:  ALVFRKDNARGVRAES

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-23

51.35

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Query:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL
        SK  KH WT  ED VL  CL+ LV+ GGW  DNGT                     GFGWNEERKCIEAEK +FD WV+GHP+A+GL N+PF +F +L +
Subjt:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL

Query:  VFRKDNARGVR
        VF +D A G R
Subjt:  VFRKDNARGVR

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]

4.6e-22

47.37

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Query:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL
        SK  KH WT  ED VL +CL+ LV+ GGW  DNGT                     GFGWNE +KCIE EK +FD WV+GHP A+GL N+PF +F +L +
Subjt:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL

Query:  VFRKDNARGVRAES
        VF +D A G R ++
Subjt:  VFRKDNARGVRAES

XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]

1.2e-22

48.25

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Query:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL
        SK  KH WT  ED  L +CL+ LV+ GGW  DNGT                     GFGWNEERKCIEAEK +FD WV+GHP A+ L N+PF +F +L +
Subjt:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL

Query:  VFRKDNARGVRAES
        VF +D A G R ++
Subjt:  VFRKDNARGVRAES

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CI24 uncharacterized protein At2g29880-like

5.9e-23

48.25

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Query:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL
        SK  KH WT  ED  L +CL+ LV+ GGW  DNGT                     GFGWNEERKCIEAEK +FD WV+GHP A+ L N+PF +F +L +
Subjt:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL

Query:  VFRKDNARGVRAES
        VF +D A G R ++
Subjt:  VFRKDNARGVRAES

A0A5A7SQL1 Retrotransposon protein

8.2e-25

49.52

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Query:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARG
        +++++  +H+WT EE+  + +CL+ LV +GGW  DNGT         GFGWN+E KCI AEKE+FD WV  HP AKGL N+PFT++NEL  VF ++ A G
Subjt:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARG

Query:  VRAES
          AE+
Subjt:  VRAES

A0A5A7UDL5 Retrotransposon protein

4.5e-23

44.83

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Query:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT--------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNEL
        +++++  +H+WT EE+  L +CL+ LV +GGW  DNGT                    GFGWN+E KCI AEKE+FD WV  HP AKGL N+PF +++EL
Subjt:  TSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT--------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNEL

Query:  ALVFRKDNARGVRAES
          VF +D A G  AE+
Subjt:  ALVFRKDNARGVRAES

A0A5D3C542 Retrotransposon protein

9.0e-24

51.35

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Query:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL
        SK  KH WT  ED VL  CL+ LV+ GGW  DNGT                     GFGWNEERKCIEAEK +FD WV+GHP+A+GL N+PF +F +L +
Subjt:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL

Query:  VFRKDNARGVR
        VF +D A G R
Subjt:  VFRKDNARGVR

A0A5D3C7T4 Uncharacterized protein

2.2e-22

47.37

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Query:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL
        SK  KH WT  ED VL +CL+ LV+ GGW  DNGT                     GFGWNE +KCIE EK +FD WV+GHP A+GL N+PF +F +L +
Subjt:  SKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGT---------------------GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELAL

Query:  VFRKDNARGVRAES
        VF +D A G R ++
Subjt:  VFRKDNARGVRAES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

4.6e-04

26.42

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Query:  GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARG
        GF W+  R  + A+ +I++ +++ HP+A+  R +    +  L  +F K+ + G
Subjt:  GFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARG

AT5G27260.1 unknown protein

2.4e-05

35.09

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Query:  TGFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARGVRA
        +GFGW+   K   A  E++  +++ HP  K LR   F +F+EL ++F +  A G  A
Subjt:  TGFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARGVRA

Sequences

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CDS sequence

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ATGCAGATGGCAGCGCCTACCTCAGCTTCGAAGAAAGAGAAACACATCTGGACACCGGAAGAAGACGCAGTCCTTGCGCAGTGCCTAGTTCACCTAGTCCAAGTGGGGGG
ATGGTGTGGAGATAATGGGACTGGATTTGGTTGGAACGAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTAGAGGGACATCCACAGGCAAAGG
GCCTCCGTAACCAGCCATTCACGTGGTTCAATGAGTTGGCACTTGTTTTCAGAAAGGACAACGCTAGAGGAGTGAGAGCCGAATCCCAATTGAGATAA

mRNA sequence

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Protein sequence

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MQMAAPTSASKKEKHIWTPEEDAVLAQCLVHLVQVGGWCGDNGTGFGWNEERKCIEAEKEIFDLWVEGHPQAKGLRNQPFTWFNELALVFRKDNARGVRAESQLR

Lag0022252 (gene) of Sponge gourd (AG-4) v1 genome