; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022253 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022253
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr7:22118916..22119940
RNA-Seq ExpressionLag0022253
SyntenyLag0022253
Gene Ontology termsNA
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048191.1 retrotransposon protein [Cucumis melo var. makuwa]7.7e-9557.46Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT---------------------TIG
        LRT G L+AT YVDVEEM A+FLHIVAHDVKNRV RR F RS  TVSRHFNVVL+ VLR+H +LLK P+ VT+SC+                      + 
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT---------------------TIG

Query:  GSGLR--------------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG
        G+ ++                                      WEGSASDSRVLRDVV+RP GLKVP+GYYYLCDA Y N +GFL PYR  RYHL EWRG
Subjt:  GSGLR--------------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG

Query:  GNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSA
        GNPP  PKELFNMRHSSARNVIERAF  LK RWAILRG+SYYPVD+Q K ITACC LHN I REM  + + E  H GE DS+ M  +NI FVE+T  W+ 
Subjt:  GNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSA

Query:  WRDDLANQMFAEWNN
        WRD+LANQMF +WNN
Subjt:  WRDDLANQMFAEWNN

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-8353.09Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------------------
        LRTT  L  T  +DVEEMVAMFLHI+AH VKNR+I+R+FVRSGETVSRHFN+VL    RLH  LLK P+PVTNSCT                        
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------------------

Query:  -------------------TIGGSGLR---------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTT
                            +G    +         WEGSA+DSR+LRD ++R  GLKVP+GYYYLCDA YPNA+GFL PYR  RYHL+EWRG  N PTT
Subjt:  -------------------TIGGSGLR---------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTT

Query:  PKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLA
         +E FNM+HSS+RNVIERAF +LKG WAILRGKSYYPVDVQ +TI ACC LHN I REM     ++    G+      G D I ++E++  WS WRD LA
Subjt:  PKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLA

Query:  NQMFAEW
        + MF++W
Subjt:  NQMFAEW

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]7.2e-9358.5Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----
        LRT G L+AT YVDVEEM+A+FLHIVAHDVKNRV RR F RSGETVSRHFN     VLRLH +LLK P+PVT SC+             + G+ ++    
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----

Query:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKE
                                          WEGSASDSRVLRD V+R TGLKVP+GYYYLCDA YPNA+GFL PYR  RYHLTEWRGGNPP  PKE
Subjt:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKE

Query:  LFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQM
        LFNMRHS ARNVIERAF  L  RW IL+G+SYY VD+Q K ITACC LHN I REMG + + +  H GE DS+ M  +NI FVE+T  W+ WRD+LANQM
Subjt:  LFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQM

Query:  FAEWNN
        F +WNN
Subjt:  FAEWNN

TYK08067.1 retrotransposon protein [Cucumis melo var. makuwa]4.8e-9761.56Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLR----------------
        LRT G L+AT YVDVEEM A+FLHIVAHDVKNRV RR F RS  TVSRHFNVVL+ VLR+H +LLK P+ VT+SC  + G+ ++                
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLR----------------

Query:  ----------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNV
                              WEGSASDSRVLRDVV+RP GLKVP+GYYYLCDA Y N +GFL PYR  RYHL EWRGGNPP  PKELFNMRHSSARNV
Subjt:  ----------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNV

Query:  IERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQMFAEWNN
        IERAF  LK RWAILRG+SYYPVD+Q K ITACC LHN I REM  + + E  H GE DS+ M  +NI FVE+T  W+ WRD+LANQMF +WNN
Subjt:  IERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQMFAEWNN

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]8.8e-8353.77Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----
        LRTT  L  T  +DVEEMVAMFLHI+AHDVKNR+I+R+FVRSGETVSRHFN+VL    RLH  LLK P+PVTNSCT             + G+ ++    
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----

Query:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTTPK
                                          WEGSA+DSR+LRD ++R  GLKVP+GYYYLCDA YPNA+GFL PYR  RYHL+EWRG  N PTT +
Subjt:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTTPK

Query:  ELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQ
        E FNM+HSSARNVIERAF +LKGRWAILRGKSYYPVDVQ +TI ACC LHN I REM     +E                I ++E++  WS WRD LA+ 
Subjt:  ELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQ

Query:  MFAEW
        MF++W
Subjt:  MFAEW

TrEMBL top hitse value%identityAlignment
A0A1S3C1U8 putative nuclease HARBI14.3e-8353.77Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----
        LRTT  L  T  +DVEEMVAMFLHI+AHDVKNR+I+R+FVRSGETVSRHFN+VL    RLH  LLK P+PVTNSCT             + G+ ++    
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----

Query:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTTPK
                                          WEGSA+DSR+LRD ++R  GLKVP+GYYYLCDA YPNA+GFL PYR  RYHL+EWRG  N PTT +
Subjt:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTTPK

Query:  ELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQ
        E FNM+HSSARNVIERAF +LKGRWAILRGKSYYPVDVQ +TI ACC LHN I REM     +E                I ++E++  WS WRD LA+ 
Subjt:  ELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQ

Query:  MFAEW
        MF++W
Subjt:  MFAEW

A0A5A7U3R2 Retrotransposon protein3.7e-9557.46Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT---------------------TIG
        LRT G L+AT YVDVEEM A+FLHIVAHDVKNRV RR F RS  TVSRHFNVVL+ VLR+H +LLK P+ VT+SC+                      + 
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT---------------------TIG

Query:  GSGLR--------------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG
        G+ ++                                      WEGSASDSRVLRDVV+RP GLKVP+GYYYLCDA Y N +GFL PYR  RYHL EWRG
Subjt:  GSGLR--------------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG

Query:  GNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSA
        GNPP  PKELFNMRHSSARNVIERAF  LK RWAILRG+SYYPVD+Q K ITACC LHN I REM  + + E  H GE DS+ M  +NI FVE+T  W+ 
Subjt:  GNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSA

Query:  WRDDLANQMFAEWNN
        WRD+LANQMF +WNN
Subjt:  WRDDLANQMFAEWNN

A0A5A7VG45 Retrotransposon protein3.5e-9358.5Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----
        LRT G L+AT YVDVEEM+A+FLHIVAHDVKNRV RR F RSGETVSRHFN     VLRLH +LLK P+PVT SC+             + G+ ++    
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------TIGGSGLR----

Query:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKE
                                          WEGSASDSRVLRD V+R TGLKVP+GYYYLCDA YPNA+GFL PYR  RYHLTEWRGGNPP  PKE
Subjt:  ----------------------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKE

Query:  LFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQM
        LFNMRHS ARNVIERAF  L  RW IL+G+SYY VD+Q K ITACC LHN I REMG + + +  H GE DS+ M  +NI FVE+T  W+ WRD+LANQM
Subjt:  LFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQM

Query:  FAEWNN
        F +WNN
Subjt:  FAEWNN

A0A5D3C7X6 Retrotransposon protein2.3e-9761.56Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLR----------------
        LRT G L+AT YVDVEEM A+FLHIVAHDVKNRV RR F RS  TVSRHFNVVL+ VLR+H +LLK P+ VT+SC  + G+ ++                
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLR----------------

Query:  ----------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNV
                              WEGSASDSRVLRDVV+RP GLKVP+GYYYLCDA Y N +GFL PYR  RYHL EWRGGNPP  PKELFNMRHSSARNV
Subjt:  ----------------------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNV

Query:  IERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQMFAEWNN
        IERAF  LK RWAILRG+SYYPVD+Q K ITACC LHN I REM  + + E  H GE DS+ M  +NI FVE+T  W+ WRD+LANQMF +WNN
Subjt:  IERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLANQMFAEWNN

A0A5D3DG22 Retrotransposon protein2.5e-8353.09Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------------------
        LRTT  L  T  +DVEEMVAMFLHI+AH VKNR+I+R+FVRSGETVSRHFN+VL    RLH  LLK P+PVTNSCT                        
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCT------------------------

Query:  -------------------TIGGSGLR---------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTT
                            +G    +         WEGSA+DSR+LRD ++R  GLKVP+GYYYLCDA YPNA+GFL PYR  RYHL+EWRG  N PTT
Subjt:  -------------------TIGGSGLR---------WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTT

Query:  PKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLA
         +E FNM+HSS+RNVIERAF +LKG WAILRGKSYYPVDVQ +TI ACC LHN I REM     ++    G+      G D I ++E++  WS WRD LA
Subjt:  PKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHTGEQDSNGMGSDNITFVESTTAWSAWRDDLA

Query:  NQMFAEW
        + MF++W
Subjt:  NQMFAEW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.9e-1529.24Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRL---------HSVLLKAPEPV-------------------T
        L+T   LQ T  + +EE VAMFL I  H+   R +  +F R+ ETV R F  VL     L            L + PE +                   T
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRL---------HSVLLKAPEPV-------------------T

Query:  NSCTTIGG--SGLRWE---------------------------GSASDSRVLRDVVARPTGLKVPRG-YYYLCDARYPNADGFLVPYRST-----RYHLT
        + C  +     G+ W                            GS  D+ VL+      +   +P    YYL D+ YPN  G L PYRS+     RYH++
Subjt:  NSCTTIGG--SGLRWE---------------------------GSASDSRVLRDVVARPTGLKVPRG-YYYLCDARYPNADGFLVPYRST-----RYHLT

Query:  EWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGR
        ++  G  P    ELFN  H+S R+VIER F + K +
Subjt:  EWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGR

AT4G10890.1 unknown protein2.6e-1632.56Show/hide
Query:  LQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLRWEGSASDSRVLRDVVARPTGLK
        LQ    V +EE VAMFL  V  +   R I  ++ +S   V R  + VL  +L+  +  LK+ E                   + D++VL+      +   
Subjt:  LQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLRWEGSASDSRVLRDVVARPTGLK

Query:  VPRG-YYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAIL
         P    YYL ++ YP   G+L P+R   YHL ++  G PP T +ELFN +H   R+VI+R F + K +W IL
Subjt:  VPRG-YYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAIL

AT5G12010.1 unknown protein4.5e-0830.83Show/hide
Query:  WEGSASDSRVLRD--VVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSY
        W GS  D +VL    +  R     + +G +      +P  D  LVPY  T+ +LT W         +  FN + S  + V + AF  LKGRWA L+ ++ 
Subjt:  WEGSASDSRVLRD--VVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSY

Query:  YPVDVQVKTITACCYLHNRI-TREMGQDPSMEV
          +      + ACC LHN    RE   +P + V
Subjt:  YPVDVQVKTITACCYLHNRI-TREMGQDPSMEV

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.9e-2235.48Show/hide
Query:  WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYY
        WEGSA DSRVL D + +          +YL D  + N   FL P+R  RYHL E+ G    P TP ELFN+RH S RNVIER F + K R+AI +    +
Subjt:  WEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRG-GNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYY

Query:  PVDVQVKTITACCYLHNRITREMGQDPS---MEVTHTGE---QDSNGMGSDNITFVESTTA-------WSAWRDDLANQMFAEWNN
            Q   +  C  LHN + +E   D +    EV + G+    + N M ++ I   E   A        + WR  +A  M+ +  N
Subjt:  PVDVQVKTITACCYLHNRITREMGQDPS---MEVTHTGE---QDSNGMGSDNITFVESTTA-------WSAWRDDLANQMFAEWNN

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.5e-3232.68Show/hide
Query:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRL---------HSVLLKAPEPVTNSCTTI-------------
        L+T G L+ TN + +E  +A+FL I+ H+++ R ++  F  SGET+SRHFN VL+ V+ +         +S  L+  +P    C  +             
Subjt:  LRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRL---------HSVLLKAPEPVTNSCTTI-------------

Query:  ------GGSGL--------------------RWEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELF
               G+GL                     WEGSASD +VL   + R   L+VP+G YY+ D +YPN  GF+ PY             N     KE+F
Subjt:  ------GGSGL--------------------RWEGSASDSRVLRDVVARPTGLKVPRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELF

Query:  NMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQD
        N RH      I R F  LK R+ IL     YP+  QVK + A C LHN +  E   D
Subjt:  NMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCCTTTACGGACCACTGGTAGACTGCAAGCCACTAACTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATCGTTGCACACGATGTTAAGAATCGTGT
CATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACACTTCAATGTCGTACTGGATGTGGTACTCCGGTTGCACTCAGTCTTATTGAAAGCACCTGAACCAG
TTACCAATTCGTGTACAACGATAGGTGGAAGTGGTTTGAGGTGGGAAGGATCTGCATCTGACTCAAGGGTACTTCGTGATGTAGTCGCACGTCCTACGGGACTAAAGGTT
CCCAGGGGCTACTACTACCTGTGTGATGCGAGATATCCCAACGCGGATGGATTCCTAGTGCCTTACCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCC
ACCTACGACCCCGAAGGAGCTTTTCAACATGAGACATTCATCAGCACGGAATGTCATAGAACGAGCGTTCGACATGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAAT
CGTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGTTGCTACCTACATAACCGAATAACACGGGAGATGGGACAAGATCCTTCGATGGAGGTTACTCATACG
GGGGAACAAGATTCAAACGGTATGGGATCAGACAACATCACATTCGTTGAGTCCACCACTGCATGGAGTGCCTGGAGGGATGACTTGGCGAATCAAATGTTCGCGGAATG
GAACAACAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACCCTTTACGGACCACTGGTAGACTGCAAGCCACTAACTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATCGTTGCACACGATGTTAAGAATCGTGT
CATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACACTTCAATGTCGTACTGGATGTGGTACTCCGGTTGCACTCAGTCTTATTGAAAGCACCTGAACCAG
TTACCAATTCGTGTACAACGATAGGTGGAAGTGGTTTGAGGTGGGAAGGATCTGCATCTGACTCAAGGGTACTTCGTGATGTAGTCGCACGTCCTACGGGACTAAAGGTT
CCCAGGGGCTACTACTACCTGTGTGATGCGAGATATCCCAACGCGGATGGATTCCTAGTGCCTTACCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCC
ACCTACGACCCCGAAGGAGCTTTTCAACATGAGACATTCATCAGCACGGAATGTCATAGAACGAGCGTTCGACATGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAAT
CGTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGTTGCTACCTACATAACCGAATAACACGGGAGATGGGACAAGATCCTTCGATGGAGGTTACTCATACG
GGGGAACAAGATTCAAACGGTATGGGATCAGACAACATCACATTCGTTGAGTCCACCACTGCATGGAGTGCCTGGAGGGATGACTTGGCGAATCAAATGTTCGCGGAATG
GAACAACAACTGA
Protein sequenceShow/hide protein sequence
MYPLRTTGRLQATNYVDVEEMVAMFLHIVAHDVKNRVIRRQFVRSGETVSRHFNVVLDVVLRLHSVLLKAPEPVTNSCTTIGGSGLRWEGSASDSRVLRDVVARPTGLKV
PRGYYYLCDARYPNADGFLVPYRSTRYHLTEWRGGNPPTTPKELFNMRHSSARNVIERAFDMLKGRWAILRGKSYYPVDVQVKTITACCYLHNRITREMGQDPSMEVTHT
GEQDSNGMGSDNITFVESTTAWSAWRDDLANQMFAEWNNN