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Lag0022261 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022261
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:22351819..22352307
RNA-Seq ExpressionLag0022261
SyntenyLag0022261
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]4.2e-1438.58Show/hide
Query:  LVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEI
        L GW K+NVD +C  +  RT IG + RN  G +LAA +    A + P  AE+LA+LEG+  A  L+IQ +  ESD   L+++L     +     +W+ +I
Subjt:  LVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEI

Query:  KELALCFSNVVFCHVGRGSNEPAHCLA
        + LA  F +  F HV R SN+ A  +A
Subjt:  KELALCFSNVVFCHVGRGSNEPAHCLA

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]2.1e-1332.03Show/hide
Query:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE
        P   W K+NVD +C ++  RTGIG + +N  G ++ AM       Y P   E LA+LEG+     L + F+ V+SD ++ +++++       +  +WV +
Subjt:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE

Query:  IKELALCFSNVVFCHVGRGSNEPAHCLA
        I   A+ F +++F H+ R S+   H LA
Subjt:  IKELALCFSNVVFCHVGRGSNEPAHCLA

XP_035541248.1 uncharacterized protein LOC118344515 [Juglans regia]1.0e-1233.83Show/hide
Query:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE
        P  G+ KLNVD +    L  +G+GA++R+  G ++ AM+   +  +   + EALA L G++    L I  L++E D  ++M+ +      L +  I +HE
Subjt:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE

Query:  IKELALCFSNVVFCHVGRGSNEPAHCLARREGF
        +K++   F +    HVGR  NE AH LAR+  F
Subjt:  IKELALCFSNVVFCHVGRGSNEPAHCLARREGF

XP_035545068.1 uncharacterized protein LOC118348173 [Juglans regia]6.0e-1338.76Show/hide
Query:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE
        P  G  KLNVDA+      + G+GA++R+  G +L A + + +      + E LA+  GM+    + +  LVVESD    +D LN  S T S  G+  +E
Subjt:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE

Query:  IKELALCFSNVVFCHVGRGSNEPAHCLAR
        IK+LA CF   +F HV R  N  AH LAR
Subjt:  IKELALCFSNVVFCHVGRGSNEPAHCLAR

XP_042942894.1 uncharacterized protein LOC122277073 [Carya illinoinensis]3.5e-1340.65Show/hide
Query:  KLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEIKELAL
        KLNVD +  +  ++ GIG ++R+  G V+ A T S      P   E LA+L GM+    L I  L+VESDC  L++ L  S +  S +   V E+K L  
Subjt:  KLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEIKELAL

Query:  CFSNVVFCHVGRGSNEPAHCLAR
        CF  V+F HV R  N  AH LAR
Subjt:  CFSNVVFCHVGRGSNEPAHCLAR

TrEMBL top hitse value%identityAlignment
A0A6J1CNR4 uncharacterized protein LOC1110129502.0e-1438.58Show/hide
Query:  LVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEI
        L GW K+NVD +C  +  RT IG + RN  G +LAA +    A + P  AE+LA+LEG+  A  L+IQ +  ESD   L+++L     +     +W+ +I
Subjt:  LVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEI

Query:  KELALCFSNVVFCHVGRGSNEPAHCLA
        + LA  F +  F HV R SN+ A  +A
Subjt:  KELALCFSNVVFCHVGRGSNEPAHCLA

A0A6J1DJL6 uncharacterized protein LOC1110217111.0e-1332.03Show/hide
Query:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE
        P   W K+NVD +C ++  RTGIG + +N  G ++ AM       Y P   E LA+LEG+     L + F+ V+SD ++ +++++       +  +WV +
Subjt:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE

Query:  IKELALCFSNVVFCHVGRGSNEPAHCLA
        I   A+ F +++F H+ R S+   H LA
Subjt:  IKELALCFSNVVFCHVGRGSNEPAHCLA

A0A6P9EA87 uncharacterized protein LOC1183445155.0e-1333.83Show/hide
Query:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE
        P  G+ KLNVD +    L  +G+GA++R+  G ++ AM+   +  +   + EALA L G++    L I  L++E D  ++M+ +      L +  I +HE
Subjt:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE

Query:  IKELALCFSNVVFCHVGRGSNEPAHCLARREGF
        +K++   F +    HVGR  NE AH LAR+  F
Subjt:  IKELALCFSNVVFCHVGRGSNEPAHCLARREGF

A0A6P9EME2 uncharacterized protein LOC1183481732.9e-1338.76Show/hide
Query:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE
        P  G  KLNVDA+      + G+GA++R+  G +L A + + +      + E LA+  GM+    + +  LVVESD    +D LN  S T S  G+  +E
Subjt:  PLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHE

Query:  IKELALCFSNVVFCHVGRGSNEPAHCLAR
        IK+LA CF   +F HV R  N  AH LAR
Subjt:  IKELALCFSNVVFCHVGRGSNEPAHCLAR

A0A803NI87 Uncharacterized protein8.5e-1335.48Show/hide
Query:  KLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEIKELAL
        K+NVDA+C V+  + G+G ++RN  G ++AA + SF   Y     EA A+L G++ A   ++    +ESD   L++ +N  S+ +S  G  V +IK    
Subjt:  KLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEIKELAL

Query:  CFSNVVFCHVGRGSNEPAHCLARR
          S+V   HV R +N+ AH LA++
Subjt:  CFSNVVFCHVGRGSNEPAHCLARR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein4.2e-0436.14Show/hide
Query:  SPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEIKELALCFSNVVFCHVGRGSNEPAHCLAR
        SP  AEA A+   M HA +L    L+V SD KS++D LN + S     G+ V EI+ +   F ++ F  + R  N  A   A+
Subjt:  SPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMDMLNGSSSTLSKDGIWVHEIKELALCFSNVVFCHVGRGSNEPAHCLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAAAAGATGATTTGGGTTTTAAGAAATCGATTTCGTTTATATGGGTTCGTGCTTTTGATTCTGCTTTGGTGGATGAACCGCTTGTGGGTTGGAGTAAGCTAAA
TGTCGATGCATCTTGCCCTGTGAATCTCCAGCGGACGGGGATTGGAGCGTTAATTCGAAACTGTGATGGGGTCGTTCTGGCAGCTATGACTAACTCCTTTGTTGCGTCTT
ATTCTCCGTTTAATGCTGAGGCCTTGGCAGTTTTGGAGGGCATGGAGCATGCGCATCGTTTGAGCATTCAATTCCTTGTGGTTGAATCAGATTGTAAGTCGTTGATGGAT
ATGCTTAATGGTTCTTCTTCAACCTTGTCAAAGGACGGCATATGGGTTCATGAAATCAAAGAGTTGGCCCTGTGTTTTTCCAATGTTGTTTTCTGTCATGTAGGTCGTGG
ATCTAATGAACCAGCTCATTGTCTTGCAAGGAGAGAGGGATTTCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAAAAGATGATTTGGGTTTTAAGAAATCGATTTCGTTTATATGGGTTCGTGCTTTTGATTCTGCTTTGGTGGATGAACCGCTTGTGGGTTGGAGTAAGCTAAA
TGTCGATGCATCTTGCCCTGTGAATCTCCAGCGGACGGGGATTGGAGCGTTAATTCGAAACTGTGATGGGGTCGTTCTGGCAGCTATGACTAACTCCTTTGTTGCGTCTT
ATTCTCCGTTTAATGCTGAGGCCTTGGCAGTTTTGGAGGGCATGGAGCATGCGCATCGTTTGAGCATTCAATTCCTTGTGGTTGAATCAGATTGTAAGTCGTTGATGGAT
ATGCTTAATGGTTCTTCTTCAACCTTGTCAAAGGACGGCATATGGGTTCATGAAATCAAAGAGTTGGCCCTGTGTTTTTCCAATGTTGTTTTCTGTCATGTAGGTCGTGG
ATCTAATGAACCAGCTCATTGTCTTGCAAGGAGAGAGGGATTTCATTAG
Protein sequenceShow/hide protein sequence
MLEKDDLGFKKSISFIWVRAFDSALVDEPLVGWSKLNVDASCPVNLQRTGIGALIRNCDGVVLAAMTNSFVASYSPFNAEALAVLEGMEHAHRLSIQFLVVESDCKSLMD
MLNGSSSTLSKDGIWVHEIKELALCFSNVVFCHVGRGSNEPAHCLARREGFH