; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022274 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022274
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:22622430..22622897
RNA-Seq ExpressionLag0022274
SyntenyLag0022274
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-0646.38Show/hide
Query:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGK
        P  N+++VM I+  T E+RM E+++ IN LM A++EK  +IA LK+ IE++ +AESS    ++N DKGK
Subjt:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGK

KAA0035918.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-0640.45Show/hide
Query:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS
        P  N+++VM+    T E RMVE+ + +N LMK +EE+  +IA LK+ IE+   AESS +Q ++N DKGKT        ++Q  H   N+
Subjt:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.0e-0647.14Show/hide
Query:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKT
        P  N+++VM+ +  T E RM E+++ +N LMKA+EE+  +IA LK+ IE+   AESS +  I+N DKGKT
Subjt:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKT

TYK26810.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-0631.29Show/hide
Query:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH
        S K +S   V + +Y+G  T     G+T ++D+ S VA               ++K NPL+            E  ++V++VMM +  T+E  M EM+  
Subjt:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH

Query:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS
        +N LMK +E++  +I  L+ Q+  +  AESSQ+ V++  DKGK   MI +S+  Q    P  S
Subjt:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS

TYK28164.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-0832.9Show/hide
Query:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH
        S K +S  +V + +Y G  TH  F G+  ++D+ S VA               ++K NPL+            E   +V+++MM +  T+E  M EM+  
Subjt:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH

Query:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQ
        IN LMK +EE+  +I  L+ Q+  +  AESSQ+ V++  DKGK   MI++S+  Q
Subjt:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQ

TrEMBL top hitse value%identityAlignment
A0A5A7SLN5 Ty3-gypsy retrotransposon protein1.9e-0646.38Show/hide
Query:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGK
        P  N+++VM I+  T E+RM E+++ IN LM A++EK  +IA LK+ IE++ +AESS    ++N DKGK
Subjt:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGK

A0A5A7SZB7 Ty3-gypsy retrotransposon protein1.9e-0640.45Show/hide
Query:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS
        P  N+++VM+    T E RMVE+ + +N LMK +EE+  +IA LK+ IE+   AESS +Q ++N DKGKT        ++Q  H   N+
Subjt:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS

A0A5D3C857 Ty3-gypsy retrotransposon protein1.9e-0647.14Show/hide
Query:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKT
        P  N+++VM+ +  T E RM E+++ +N LMKA+EE+  +IA LK+ IE+   AESS +  I+N DKGKT
Subjt:  PDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKT

A0A5D3DU35 Ty3-gypsy retrotransposon protein1.1e-0631.29Show/hide
Query:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH
        S K +S   V + +Y+G  T     G+T ++D+ S VA               ++K NPL+            E  ++V++VMM +  T+E  M EM+  
Subjt:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH

Query:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS
        +N LMK +E++  +I  L+ Q+  +  AESSQ+ V++  DKGK   MI +S+  Q    P  S
Subjt:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNS

A0A5D3DXA8 Ty3-gypsy retrotransposon protein2.1e-0832.9Show/hide
Query:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH
        S K +S  +V + +Y G  TH  F G+  ++D+ S VA               ++K NPL+            E   +V+++MM +  T+E  M EM+  
Subjt:  SFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLF------------EPDSNVVTVMMIETRTMEERMVEMQEH

Query:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQ
        IN LMK +EE+  +I  L+ Q+  +  AESSQ+ V++  DKGK   MI++S+  Q
Subjt:  INTLMKAIEEKISQIAQLKSQIENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCATACATGGGTTCTACTACCCATTGTTGCTTCAACGGACTGACGTTGCAAGAAGATAAAGCTTCTAT
CGTTGCAAGCCAAGAAACATCATTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTGTAACCCTTTGTTTGAACCTGATTCTAACGTAGTGACTGTCATGATGA
TTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAATTTCTCAAATTGCGCAACTAAAGAGCCAA
ATTGAGAATCAACATATCGCCGAATCAAGTCAAAGCCAAGTCATAAGAAATCATGACAAAGGAAAGACTAGCAAGATGATCAGCCACAGTGTTCTGCTTCAGTCGTTTCA
CTATCCGTCCAACAGCTCCAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCATACATGGGTTCTACTACCCATTGTTGCTTCAACGGACTGACGTTGCAAGAAGATAAAGCTTCTAT
CGTTGCAAGCCAAGAAACATCATTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTGTAACCCTTTGTTTGAACCTGATTCTAACGTAGTGACTGTCATGATGA
TTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAATTTCTCAAATTGCGCAACTAAAGAGCCAA
ATTGAGAATCAACATATCGCCGAATCAAGTCAAAGCCAAGTCATAAGAAATCATGACAAAGGAAAGACTAGCAAGATGATCAGCCACAGTGTTCTGCTTCAGTCGTTTCA
CTATCCGTCCAACAGCTCCAAGATATGA
Protein sequenceShow/hide protein sequence
MSFKTSSMVAVMNKSYMGSTTHCCFNGLTLQEDKASIVASQETSLQGAYTNDKFLVKCNPLFEPDSNVVTVMMIETRTMEERMVEMQEHINTLMKAIEEKISQIAQLKSQ
IENQHIAESSQSQVIRNHDKGKTSKMISHSVLLQSFHYPSNSSKI