CuGenDBv2

Gene ID	Lag0022291
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase III subunit RPC3
Genome location	chr7:23334301..23337872
RNA-Seq Expression	Lag0022291
Synteny	Lag0022291
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033658.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa]

8.1e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

TYK22958.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa]

8.1e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

XP_008439232.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo]

8.1e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

XP_038878061.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida]

8.1e-23

67.44

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Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        +  GN PIP++VHDSLFKLLNAHFVERCP PEP+LSP+VEEQPPP+K      KISE+P TLEQ  +E+A PMEVLRFS+G+ + E
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

XP_038878063.1 DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Benincasa hispida]

8.1e-23

67.44

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Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        +  GN PIP++VHDSLFKLLNAHFVERCP PEP+LSP+VEEQPPP+K      KISE+P TLEQ  +E+A PMEVLRFS+G+ + E
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYY3 DNA-directed RNA polymerase III subunit RPC3

3.9e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

A0A1S4DT15 DNA-directed RNA polymerase III subunit RPC3

3.9e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

A0A5A7SSU3 DNA-directed RNA polymerase III subunit RPC3

3.9e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

A0A5D3DHJ0 DNA-directed RNA polymerase III subunit RPC3

3.9e-23

70.59

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Query:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        R GN PIP+VVHDSLFKLLNAHFVERCP PEPTLSP+VEEQPPPRK      KI E+P TLEQ  +E A P+EVLRFS+G+ + E
Subjt:  RVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

A0A6J1HUV1 DNA-directed RNA polymerase III subunit RPC3

8.7e-23

68.6

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Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE
        +  GN PIP+VV++SL KLLNAHFVERCP PEPTLSPQVEEQPPPRK      K+SE+P TLEQ  +E+A PMEV+RFSIGE + E
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK------KISEMPATLEQPPLETAHPMEVLRFSIGEGDQE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G49000.1 RNA polymerase III subunit RPC82 family protein

1.9e-06

40.51

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Query:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK-----KISEMPATLEQPPLETAHPMEVLRFSI
        R  GN      + DSL KL+ A FVER P+PEP L  + E++P  R+     KI + P TLE+  +E A P++ +RF +
Subjt:  RRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRK-----KISEMPATLEQPPLETAHPMEVLRFSI

Sequences

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CDS sequence

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ATGAAATCACCGTCGCTGCCTAGATCTAGCGAAACACTCCCGCCGTTGTTCGTGGGTTACTCTTTCTTCGTTCAAATCTACTTGCGGCGTGTGGGAAACCATCCAATTCC
AAATGTTGTACATGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTCGAACGTTGTCCAACCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAACAACCTCCTCCTA
GGAAAAAGATATCTGAGATGCCAGCAACCTTAGAGCAACCTCCTCTAGAAACAGCCCATCCAATGGAAGTTCTAAGATTTTCAATAGGTGAAGGAGACCAAGAAGAGGTT
CCACGAGAGTTTCAAGATCGGGAAGAACATGTGGTTTTTCACCAAGCTCAGCCCCCTCCGATTAATCCACGGCTTCTCCGTCGCCACCACCATCGTGAACTTCACCTCTT
CGCCGTTCATCCTGTCGGCGAGTTAGGCGATTTAAATCAATGGGGGAATAGACAAAGCAACATCTTTTTTTCTCAGCTTTCTGAATTTGACTTCGCGAGTTCTGGTGGTT
TTGTGTCAGCTGTTGTTTTGGTCCTATTCTTGTTGGTTCTTGAATTGTTTGAAGCATTCGAGTTCTAA

mRNA sequence

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Protein sequence

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MKSPSLPRSSETLPPLFVGYSFFVQIYLRRVGNHPIPNVVHDSLFKLLNAHFVERCPTPEPTLSPQVEEQPPPRKKISEMPATLEQPPLETAHPMEVLRFSIGEGDQEEV
PREFQDREEHVVFHQAQPPPINPRLLRRHHHRELHLFAVHPVGELGDLNQWGNRQSNIFFSQLSEFDFASSGGFVSAVVLVLFLLVLELFEAFEF

Lag0022291 (gene) of Sponge gourd (AG-4) v1 genome