CuGenDBv2

Gene ID	Lag0022298
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr7:23701391..23704580
RNA-Seq Expression	Lag0022298
Synteny	Lag0022298
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]

1.5e-22

44.83

Show/hide

Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]

1.5e-22

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]

1.5e-22

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

KAA8535282.1 hypothetical protein F0562_030285 [Nyssa sinensis]

1.5e-22

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]

1.5e-22

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

TrEMBL top hits

e value

%identity

Alignment

A0A5J4ZHB6 Uncharacterized protein

7.1e-23

44.83

Show/hide

Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein

7.1e-23

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

A0A5J5A1U7 Integrase catalytic domain-containing protein

7.1e-23

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

A0A5J5B049 Retrotran_gag_3 domain-containing protein

7.1e-23

44.83

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Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein

7.1e-23

44.83

Show/hide

Query:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA
        L++      +   + L+  ++P+L  +++++     NPS S   LL+NICNL++ RLDSSNYV W+FQIS +LK+H L  Y+DGT     + ++ E  +A
Subjt:  LVRLATKTNEEDEVKLVQRSSPSLKLSNSSA-----NPSVS---LLNNICNLVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSA

Query:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES
         A   +NP Y+ W  +DQAL+TL+NATLSQTALS+VIG  TS+E+
Subjt:  NAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGAGATCATCGATCGATCGGAGTCGATGATCTTGGAACAAACTTCATTCCAAACACCCTCTTTTCTCTTGCCTTCTTCACCAGCGCGCTCTCTGTCTCTATCTCTCA
TGATTTCAACAATCAGACCAAGGGGGTCCTCTCTCACTATCCTTATCTCTCTGCAGCACAGAGAGGCTCAGAGATGAGGAAGCTAAGCTCTGAAAAGAAGGAAGAGAGAG
AAAGGAAAACAAAAAAAAAAAAAAGGAAGAGAAATATGGGCCTCCACAAAGCACAGACTTTCCTAGGGTTTCACTTTTCACGTTTTTTTATCTTACGTCTCGCCTCTCGC
CTCTCCTCTCATGCTCGTGGTTGTCGCCGCTGCCGGTGTTTGTGGTCGCCGCTGGTGCTTGATGTCGGTGCTGTTCAATCTCTCCTTTTCGTGCTCATGCTTTCCGCCGA
TGCGTTCTTCAAAGTTCAATCCATCTCATTCTCTATTCATGCTCACCGCCAGTGCCGTTTAGGCGTTCACTCTCCTTACTTGTGCTTGTTGCTGGTTCGACTTGCAACAA
AGACCAACGAAGAAGATGAAGTAAAACTTGTGCAGCGATCAAGCCCTAGTCTCAAACTCTCAAATTCATCAGCAAATCCGTCCGTCTCGCTCCTGAATAACATCTGCAAT
CTTGTTTCGGTACGATTAGATTCTTCGAACTATGTCATGTGGCGATTTCAAATCTCACCACTTCTTAAGTCGCACAAATTGTACAAATATGTTGATGGCACAATCAAAGC
TTCCAAGGAAACTATTCGTGTTGAAGGTCAATCCGCAAATGCTCCGGCCATCGTGAATCCAAATTACGAGCAGTGGTATGAGAGGGATCAAGCTCTCATCACTCTGATAA
ATGCAACACTCTCACAGACGGCGCTGTCATACGTGATCGGCTGCAAGACCTCCAAGGAGAGTGGTTTCAGTGAGCTGGGAAATTTCCTCTTGAGAAGTGAGGTTGAGTGT
GTGAATGATGGAGTTATTTCTCCATCTCTGAATCTTTTTCATCACAAATGGTATCAGAGCACAAGTTCGGTGATGGAGTTCAAGGAACAAGTACTGCTGTGTGAAGGAAT
GCAGATGATCTGA

mRNA sequence

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Protein sequence

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MRDHRSIGVDDLGTNFIPNTLFSLAFFTSALSVSISHDFNNQTKGVLSHYPYLSAAQRGSEMRKLSSEKKEERERKTKKKKRKRNMGLHKAQTFLGFHFSRFFILRLASR
LSSHARGCRRCRCLWSPLVLDVGAVQSLLFVLMLSADAFFKVQSISFSIHAHRQCRLGVHSPYLCLLLVRLATKTNEEDEVKLVQRSSPSLKLSNSSANPSVSLLNNICN
LVSVRLDSSNYVMWRFQISPLLKSHKLYKYVDGTIKASKETIRVEGQSANAPAIVNPNYEQWYERDQALITLINATLSQTALSYVIGCKTSKESGFSELGNFLLRSEVEC
VNDGVISPSLNLFHHKWYQSTSSVMEFKEQVLLCEGMQMI

Lag0022298 (gene) of Sponge gourd (AG-4) v1 genome