; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022315 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022315
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiondouble-stranded RNA-binding protein 1-like isoform X2
Genome locationchr7:24406335..24410700
RNA-Seq ExpressionLag0022315
SyntenyLag0022315
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149387.1 double-stranded RNA-binding protein 1-like isoform X1 [Momordica charantia]6.0e-4979.86Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP
        M+K+KLQELCHRKS KLPEY V KQGQDHDPRFEA VTV+ KEFRSQ PCKSSKQAQNEAAKLAFDFFSLPSSPSCP PQPQP P  QP+ P      RP
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP

Query:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL
        QP FP+SSPPPEQLH I QFP PSL ISSFPQPSLPS L
Subjt:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL

XP_022149390.1 double-stranded RNA-binding protein 1-like isoform X2 [Momordica charantia]6.0e-4979.86Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP
        M+K+KLQELCHRKS KLPEY V KQGQDHDPRFEA VTV+ KEFRSQ PCKSSKQAQNEAAKLAFDFFSLPSSPSCP PQPQP P  QP+ P      RP
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP

Query:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL
        QP FP+SSPPPEQLH I QFP PSL ISSFPQPSLPS L
Subjt:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL

XP_022980601.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima]7.9e-4172.26Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV
        MFKTKLQELCHRKSY+LP Y VVKQGQDHDPRFEA+VTV G +F SQ PCKSSKQAQN+AAKLAFDFFSLPSSP   P               PQP FP 
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV

Query:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG
        SSPP EQL   PQF HPSLHISSFPQPSLPSQ D+ G
Subjt:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG

XP_023527472.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo]6.1e-4172.26Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV
        MFKTKLQELCHRKSY+LP Y VVKQGQDHDPRFEA+VTV G +F SQ PCKSSKQAQN+AAKLAFDFFSLPSSP   P               PQP FP 
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV

Query:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG
        SSPP EQL   PQF HPSLHISSFPQPSLPSQ D+ G
Subjt:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG

XP_023527473.1 double-stranded RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]6.1e-4172.26Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV
        MFKTKLQELCHRKSY+LP Y VVKQGQDHDPRFEA+VTV G +F SQ PCKSSKQAQN+AAKLAFDFFSLPSSP   P               PQP FP 
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV

Query:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG
        SSPP EQL   PQF HPSLHISSFPQPSLPSQ D+ G
Subjt:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG

TrEMBL top hitse value%identityAlignment
A0A6J1D5K6 double-stranded RNA-binding protein 1-like isoform X22.9e-4979.86Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP
        M+K+KLQELCHRKS KLPEY V KQGQDHDPRFEA VTV+ KEFRSQ PCKSSKQAQNEAAKLAFDFFSLPSSPSCP PQPQP P  QP+ P      RP
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP

Query:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL
        QP FP+SSPPPEQLH I QFP PSL ISSFPQPSLPS L
Subjt:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL

A0A6J1D6X0 double-stranded RNA-binding protein 1-like isoform X12.9e-4979.86Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP
        M+K+KLQELCHRKS KLPEY V KQGQDHDPRFEA VTV+ KEFRSQ PCKSSKQAQNEAAKLAFDFFSLPSSPSCP PQPQP P  QP+ P      RP
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQP------RP

Query:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL
        QP FP+SSPPPEQLH I QFP PSL ISSFPQPSLPS L
Subjt:  QPFFPVSSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQL

A0A6J1EVN0 double-stranded RNA-binding protein 1-like5.0e-4168.49Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV
        MFKTKLQELCHRKSY+LP Y VVKQGQDHDPRFEA+VTV G +F SQ PCKSSKQAQN+AAKLAFDFFSLPSSP   P               PQP FP 
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV

Query:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTGTLLLMATPL
        SSPP EQL   PQF HPSLHISSFPQPSLPSQ D+ G    +  P+
Subjt:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTGTLLLMATPL

A0A6J1IRS0 double-stranded RNA-binding protein 4-like isoform X13.8e-4172.26Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV
        MFKTKLQELCHRKSY+LP Y VVKQGQDHDPRFEA+VTV G +F SQ PCKSSKQAQN+AAKLAFDFFSLPSSP   P               PQP FP 
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV

Query:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG
        SSPP EQL   PQF HPSLHISSFPQPSLPSQ D+ G
Subjt:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG

A0A6J1IZS6 double-stranded RNA-binding protein 1-like isoform X23.8e-4172.26Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV
        MFKTKLQELCHRKSY+LP Y VVKQGQDHDPRFEA+VTV G +F SQ PCKSSKQAQN+AAKLAFDFFSLPSSP   P               PQP FP 
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPV

Query:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG
        SSPP EQL   PQF HPSLHISSFPQPSLPSQ D+ G
Subjt:  SSPPPEQLHSIPQFPHPSLHISSFPQPSLPSQLDSTG

SwissProt top hitse value%identityAlignment
B7E321 Double-stranded RNA-binding protein 51.4e-0842.67Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSL--PSS
        M+K +LQEL  R  + LP Y   ++G DH PRF+A+VT +G+ F   + C + +QA++ AA++A    SL  PSS
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSL--PSS

Q0DKP4 Double-stranded RNA-binding protein 23.2e-0840.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y  +++G DH PRF+A+V  +G+ F S A C + + A++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

Q8GY79 Double-stranded RNA-binding protein 51.1e-0840.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y  +++G DH PRF+ASV  +G+ F S   C + +QA++ AA+++ +  S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

Q9LJF5 Double-stranded RNA-binding protein 31.4e-0842.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y   ++G DH PRF+ASV  +G+ F S   C + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

Q9SKN2 Double-stranded RNA-binding protein 21.4e-0840.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y  +++G DH PRF+A+V  +G+ F S   C + +QA++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

Arabidopsis top hitse value%identityAlignment
AT2G28380.1 dsRNA-binding protein 21.0e-0940.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y  +++G DH PRF+A+V  +G+ F S   C + +QA++ AA++A +  S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

AT3G26932.1 dsRNA-binding protein 31.0e-0942.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y   ++G DH PRF+ASV  +G+ F S   C + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

AT3G26932.2 dsRNA-binding protein 31.0e-0942.03Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y   ++G DH PRF+ASV  +G+ F S   C + +QA++ AA++A    S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS

AT5G41070.1 dsRNA-binding protein 57.7e-1040.58Show/hide
Query:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS
        M+K +LQEL  R  + LP Y  +++G DH PRF+ASV  +G+ F S   C + +QA++ AA+++ +  S
Subjt:  MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCACCGTAAATCATACAAACTACCCGAGTATTACGTGGTTAAACAAGGTCAAGATCATGACCCGCGTTTCGAAGCCTCAGT
CACTGTCGACGGCAAGGAGTTCCGCTCTCAGGCTCCCTGTAAATCTTCCAAGCAAGCACAGAACGAGGCTGCTAAGCTTGCTTTCGACTTCTTTTCTCTTCCTTCTTCAC
CCTCCTGTCCGCCACCGCAACCGCAACCGCTGCCGTCGCCGCAGCCGGAGCAGCCCCGCCCCCAACCCTTTTTTCCGGTATCATCTCCTCCGCCGGAACAACTTCATAGC
ATTCCGCAATTTCCTCACCCGTCTCTTCATATATCTTCTTTTCCACAGCCGTCCTTGCCTTCGCAATTGGATAGTACTGGGACTCTTCTTCTTATGGCCACCCCTTTAAG
AATGAAAAGAAGATCCTTTGGCTTTGTCATGTTCGTGGGAACAATAAATTTCTTCTCTTTTTGGGATCTAGTCTTGGATAAGGACGATCCCTTGTCTGTTTCAAATACCA
AACAAGCTATCATCAAGGATGTGGAAACCATGACTCATCTTGTCATTGTAGAGGAAGTCTTGGATCATTTGTTATGGAGGTGTGATTCTGCACGCTCGGCGTGGAGTCTT
TTCTTTGAGTCCTTCGCTAAGCAGATGGTTGATTATTCTAATTTGTTTACCTTTTACATTGTAATACATTGTGGTTCTATTCCGGTTCATATCAATTTGGTATTAGAGCG
ATTCGATTCTGGTATGGAGTTAGAAGAGTTTGGCGTGAAGTTAGAAAGGTTATGCGCGAATTTGATGAAGGTTGTAAACAAAGGAATGGAGAAATTGAATCGATTGGATG
AACGTTTTGGAGAAATTACAGAAGAGAGTATAGCAATCAAAAGAGAGATTAGAATGGCCAAGAAAAAGAGGCAGAAATCGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAAACAAAGCTTCAAGAGCTCTGTCACCGTAAATCATACAAACTACCCGAGTATTACGTGGTTAAACAAGGTCAAGATCATGACCCGCGTTTCGAAGCCTCAGT
CACTGTCGACGGCAAGGAGTTCCGCTCTCAGGCTCCCTGTAAATCTTCCAAGCAAGCACAGAACGAGGCTGCTAAGCTTGCTTTCGACTTCTTTTCTCTTCCTTCTTCAC
CCTCCTGTCCGCCACCGCAACCGCAACCGCTGCCGTCGCCGCAGCCGGAGCAGCCCCGCCCCCAACCCTTTTTTCCGGTATCATCTCCTCCGCCGGAACAACTTCATAGC
ATTCCGCAATTTCCTCACCCGTCTCTTCATATATCTTCTTTTCCACAGCCGTCCTTGCCTTCGCAATTGGATAGTACTGGGACTCTTCTTCTTATGGCCACCCCTTTAAG
AATGAAAAGAAGATCCTTTGGCTTTGTCATGTTCGTGGGAACAATAAATTTCTTCTCTTTTTGGGATCTAGTCTTGGATAAGGACGATCCCTTGTCTGTTTCAAATACCA
AACAAGCTATCATCAAGGATGTGGAAACCATGACTCATCTTGTCATTGTAGAGGAAGTCTTGGATCATTTGTTATGGAGGTGTGATTCTGCACGCTCGGCGTGGAGTCTT
TTCTTTGAGTCCTTCGCTAAGCAGATGGTTGATTATTCTAATTTGTTTACCTTTTACATTGTAATACATTGTGGTTCTATTCCGGTTCATATCAATTTGGTATTAGAGCG
ATTCGATTCTGGTATGGAGTTAGAAGAGTTTGGCGTGAAGTTAGAAAGGTTATGCGCGAATTTGATGAAGGTTGTAAACAAAGGAATGGAGAAATTGAATCGATTGGATG
AACGTTTTGGAGAAATTACAGAAGAGAGTATAGCAATCAAAAGAGAGATTAGAATGGCCAAGAAAAAGAGGCAGAAATCGAGATAG
Protein sequenceShow/hide protein sequence
MFKTKLQELCHRKSYKLPEYYVVKQGQDHDPRFEASVTVDGKEFRSQAPCKSSKQAQNEAAKLAFDFFSLPSSPSCPPPQPQPLPSPQPEQPRPQPFFPVSSPPPEQLHS
IPQFPHPSLHISSFPQPSLPSQLDSTGTLLLMATPLRMKRRSFGFVMFVGTINFFSFWDLVLDKDDPLSVSNTKQAIIKDVETMTHLVIVEEVLDHLLWRCDSARSAWSL
FFESFAKQMVDYSNLFTFYIVIHCGSIPVHINLVLERFDSGMELEEFGVKLERLCANLMKVVNKGMEKLNRLDERFGEITEESIAIKREIRMAKKKRQKSR