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Lag0022320 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022320
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr7:24548706..24553378
RNA-Seq ExpressionLag0022320
SyntenyLag0022320
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.9e-1070.21Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIR
        MRDCPLICTGE+G  VDSI L F GQDR+GSWE + TRWN LL   R
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]8.7e-0861.7Show/hide
Query:  DCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQI
        DCPLI T E+G   DS+ L FWGQDR+ SWE + TRWNSLL   R+I
Subjt:  DCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQI
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0569.7Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
        +RDCPLICTGE+G   DSI L FWGQDR+G W+
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-1064.58Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQ
        +RDCPL CTGE+G  VDSI L FWGQDR+GSWE + TRWNS +   R+
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQ
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0569.7Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
        +RDCPLICTGE+G   DSI L FWGQDR+G W+
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein9.1e-1170.21Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIR
        MRDCPLICTGE+G  VDSI L F GQDR+GSWE + TRWN LL   R
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIR
A0A5A7U202 Reverse transcriptase1.1e-0569.7Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
        +RDCPLICTGE+G   DSI L FWGQDR+G W+
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein4.2e-0861.7Show/hide
Query:  DCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQI
        DCPLI T E+G   DS+ L FWGQDR+ SWE + TRWNSLL   R+I
Subjt:  DCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQI
A0A5D3C3J6 Gag/pol protein9.1e-1164.58Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQ
        +RDCPL CTGE+G  VDSI L FWGQDR+GSWE + TRWNS +   R+
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQ
A0A5D3CBX3 Reverse transcriptase1.1e-0569.7Show/hide
Query:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
        +RDCPLICTGE+G   DSI L FWGQDR+G W+
Subjt:  MRDCPLICTGETGLFVDSISLPFWGQDRMGSWE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACTGGTGAGACTGGCCTGTTCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTTCCGATATTAGGCAAATAAGGATCTTGAAGGTTGCTAGAATTTTAATTCAAAGGGTAGAATTCGGCGAGGTGATCAAGGATTTCTACAACG
GTAAGGTAAAGGCAAGGGTGTACAGAATGCGTGACGAAACGTTGCTGGATGAGCCATGGAATCTCGACGACTCCTCTTCTTTGGAGTATACCCGTCTGCCCAACAGAGCC
CAACCACGGATCTCCACCATGACTATTAAGGCTCAAAACTTCTTTGTTCAGCACCCGATGATTCTACCCGACACGTCTACCGCTTGGGCATGGCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACTGGTGAGACTGGCCTGTTCGTCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACGTAGTCTTAC
AAGATGGAATTCACTCCTTTCCGATATTAGGCAAATAAGGATCTTGAAGGTTGCTAGAATTTTAATTCAAAGGGTAGAATTCGGCGAGGTGATCAAGGATTTCTACAACG
GTAAGGTAAAGGCAAGGGTGTACAGAATGCGTGACGAAACGTTGCTGGATGAGCCATGGAATCTCGACGACTCCTCTTCTTTGGAGTATACCCGTCTGCCCAACAGAGCC
CAACCACGGATCTCCACCATGACTATTAAGGCTCAAAACTTCTTTGTTCAGCACCCGATGATTCTACCCGACACGTCTACCGCTTGGGCATGGCTCTGA
Protein sequenceShow/hide protein sequence
MRDCPLICTGETGLFVDSISLPFWGQDRMGSWERSLTRWNSLLSDIRQIRILKVARILIQRVEFGEVIKDFYNGKVKARVYRMRDETLLDEPWNLDDSSSLEYTRLPNRA
QPRISTMTIKAQNFFVQHPMILPDTSTAWAWL