| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 4.3e-120 | 58.75 | Show/hide |
Query: HLQDGEMTL-KIGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEA
HL+ G + L +IGRLVK LL L+D SLPPCESCLE KMTKRPFTGKGYRAKEPLELIHS+LC PMNVKARG EYFISFIDDYS+YGYL+LM HKSEA
Subjt: HLQDGEMTL-KIGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEA
Query: LEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG--------------
LEKFKE+KTEVE+LL K IK L+ D GEYMD RFQDYMIEHGIQ QLSAPGTPQQN VSERRNRTLLDMVRSMMSYAQLPSSFWG
Subjt: LEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG--------------
Query: -------------GCKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL-------
G KPSL +F IW CPAHVLVTNPKKL+ L+L
Subjt: -------------GCKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL-------
Query: ---------------------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPP
GRVV QPNRYLGLTETQV IPDDGV+DPLSY QA N VDKD+WVKAMDLEMESMYF+ VW+ VD P
Subjt: ---------------------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPP
Query: EGVKPIGCKWTYKRKRE
EGVKPIGCKW YKRKR+
Subjt: EGVKPIGCKWTYKRKRE
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| KAA0056413.1 gag/pol protein [Cucumis melo var. makuwa] | 1.9e-123 | 47.29 | Show/hide |
Query: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
+L+K++E + AR+I +SL+EMFG PS Q+ +A+K +NARM++G V+EH+L+M+ FN+ + NG V E+SQ + LL+ + KRKG K
Subjt: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
Query: EKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGRLVKTRLLTD
EK P A K + ++ + F+ L++GEMTLK IGRLVK LL +
Subjt: EKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGRLVKTRLLTD
Query: LEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQ
LEDDSLPPCESCLE KMTKR FTGKGYRAKEPLELIHS+LC PMNVK R EYFISFIDDYS+YGYL+LM +KSE LEKFKE+K EVE+LL K IK L+
Subjt: LEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQ
Query: LDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GCKPSLHYFC
D GEYMD RFQDYMI+H IQ QLSAP TPQQN VSERRNRTLLDMV SMMSYA LPSSFWG G KPSL +F
Subjt: LDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GCKPSLHYFC
Query: IWHCPAHVLVTNPKKLD--------------------------------------------------LILD------GRVV--IQPNRYLGLTET-----
IW C AHVLVTNPKKL+ L+L+ RVV + P+ + T T
Subjt: IWHCPAHVLVTNPKKLD--------------------------------------------------LILD------GRVV--IQPNRYLGLTET-----
Query: ---QVAIPD-DGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKRKRE
+ +P DG++DPLSY +A NYVDKD+WVKAM+LEMESMYF+ VW+ V+ PEGVKPIGCKW YKRKR+
Subjt: ---QVAIPD-DGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKRKRE
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| KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa] | 4.9e-124 | 46.93 | Show/hide |
Query: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
+L+K++E + AR+IM+SL+EMFG PS Q+ +A N+A + R + +++I KRK K
Subjt: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
Query: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
K P AV + R C + ++V ++ T ++ + FK L+D EMTLK IGR
Subjt: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
Query: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
LVK LL L+D SLPPCESCLE KMTKRPFTGKGYRAKEPLELIHS+LC PMNVKARG EYFISFIDDYS+YGYL+LM HKSEALEKFKE+KTEVE+L
Subjt: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
Query: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
L K IK L+ D GEYMD RFQDYMIEHGIQ QLSAPGTPQQN VSERRNRTLLDMVRSMMSYAQLPSSFWG G
Subjt: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
Query: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
KPSL +F IW CPAHVLVTNPKKL+ L+L
Subjt: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
Query: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
GRVV QPNRYLGLTETQV IPDDGV+DPLSY QA N VDKD+WVKAMDLEMESMYF+ VW+ VD PEGVKPIGCKW YKR
Subjt: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
Query: KRE
KR+
Subjt: KRE
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| TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa] | 3.7e-119 | 44.3 | Show/hide |
Query: ANRNHFAAAELGVAECSVLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRL
A N A + + VL K++E++ AREIM+SLQEMFG SYQ++HDALK +NARM EG VREHVL+MM FN+AE NG V+ E SQ
Subjt: ANRNHFAAAELGVAECSVLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRL
Query: LQCGHSNKQIPKRK-------GDKEKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKR-KGNDFKHL------QDGEMTL-KIGRL
Q G +N RK G K + +++ + +++ A + T + +E K N K+L + G + L +I RL
Subjt: LQCGHSNKQIPKRK-------GDKEKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKR-KGNDFKHL------QDGEMTL-KIGRL
Query: VKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLL
VK +L++LE++SLP CESCLE KMTKRPFTGKG+RAKEPLEL+HS+LC PMNVKARG EYFI+F DDYS+YGY++LM HKSEALEKFKE+K EVE+ L
Subjt: VKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLL
Query: GKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GC
KTIKT + D GEYMD +FQ+Y++E I QLSAPGTPQQN VSERRNRTLLDMVRSM+SYA LP+SFWG G
Subjt: GKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GC
Query: KPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LILD---------------------
K SL +F IW CPAHVL NPKKL+ ++L+
Subjt: KPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LILD---------------------
Query: -----------------------GRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWT
GRV P RY+ LTET I D ++DPL++ +A VDKDEW+KAM+LE+ESMYF+ VWD VD P+GVKPIGCKW
Subjt: -----------------------GRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWT
Query: YKRKR
YKRKR
Subjt: YKRKR
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| TYK02840.1 gag/pol protein [Cucumis melo var. makuwa] | 4.9e-124 | 46.93 | Show/hide |
Query: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
+L+K++E + AR+IM+SL+EMFG PS Q+ +A N+A + R + +++I KRK K
Subjt: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
Query: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
K P AV + R C + ++V ++ T ++ + FK L+D EMTLK IGR
Subjt: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
Query: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
LVK LL L+D SLPPCESCLE KMTKRPFTGKGYRAKEPLELIHS+LC PMNVKARG EYFISFIDDYS+YGYL+LM HKSEALEKFKE+KTEVE+L
Subjt: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
Query: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
L K IK L+ D GEYMD RFQDYMIEHGIQ QLSAPGTPQQN VSERRNRTLLDMVRSMMSYAQLPSSFWG G
Subjt: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
Query: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
KPSL +F IW CPAHVLVTNPKKL+ L+L
Subjt: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
Query: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
GRVV QPNRYLGLTETQV IPDDGV+DPLSY QA N VDKD+WVKAMDLEMESMYF+ VW+ VD PEGVKPIGCKW YKR
Subjt: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
Query: KRE
KR+
Subjt: KRE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TZD0 Gag/pol protein | 2.1e-120 | 58.75 | Show/hide |
Query: HLQDGEMTL-KIGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEA
HL+ G + L +IGRLVK LL L+D SLPPCESCLE KMTKRPFTGKGYRAKEPLELIHS+LC PMNVKARG EYFISFIDDYS+YGYL+LM HKSEA
Subjt: HLQDGEMTL-KIGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEA
Query: LEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG--------------
LEKFKE+KTEVE+LL K IK L+ D GEYMD RFQDYMIEHGIQ QLSAPGTPQQN VSERRNRTLLDMVRSMMSYAQLPSSFWG
Subjt: LEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG--------------
Query: -------------GCKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL-------
G KPSL +F IW CPAHVLVTNPKKL+ L+L
Subjt: -------------GCKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL-------
Query: ---------------------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPP
GRVV QPNRYLGLTETQV IPDDGV+DPLSY QA N VDKD+WVKAMDLEMESMYF+ VW+ VD P
Subjt: ---------------------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPP
Query: EGVKPIGCKWTYKRKRE
EGVKPIGCKW YKRKR+
Subjt: EGVKPIGCKWTYKRKRE
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| A0A5A7UYE8 Gag/pol protein | 2.4e-124 | 46.93 | Show/hide |
Query: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
+L+K++E + AR+IM+SL+EMFG PS Q+ +A N+A + R + +++I KRK K
Subjt: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
Query: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
K P AV + R C + ++V ++ T ++ + FK L+D EMTLK IGR
Subjt: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
Query: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
LVK LL L+D SLPPCESCLE KMTKRPFTGKGYRAKEPLELIHS+LC PMNVKARG EYFISFIDDYS+YGYL+LM HKSEALEKFKE+KTEVE+L
Subjt: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
Query: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
L K IK L+ D GEYMD RFQDYMIEHGIQ QLSAPGTPQQN VSERRNRTLLDMVRSMMSYAQLPSSFWG G
Subjt: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
Query: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
KPSL +F IW CPAHVLVTNPKKL+ L+L
Subjt: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
Query: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
GRVV QPNRYLGLTETQV IPDDGV+DPLSY QA N VDKD+WVKAMDLEMESMYF+ VW+ VD PEGVKPIGCKW YKR
Subjt: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
Query: KRE
KR+
Subjt: KRE
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| A0A5A7UYX7 Gag/pol protein | 1.8e-119 | 44.3 | Show/hide |
Query: ANRNHFAAAELGVAECSVLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRL
A N A + + VL K++E++ AREIM+SLQEMFG SYQ++HDALK +NARM EG VREHVL+MM FN+AE NG V+ E SQ
Subjt: ANRNHFAAAELGVAECSVLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRL
Query: LQCGHSNKQIPKRK-------GDKEKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKR-KGNDFKHL------QDGEMTL-KIGRL
Q G +N RK G K + +++ + +++ A + T + +E K N K+L + G + L +I RL
Subjt: LQCGHSNKQIPKRK-------GDKEKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKR-KGNDFKHL------QDGEMTL-KIGRL
Query: VKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLL
VK +L++LE++SLP CESCLE KMTKRPFTGKG+RAKEPLEL+HS+LC PMNVKARG EYFI+F DDYS+YGY++LM HKSEALEKFKE+K EVE+ L
Subjt: VKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLL
Query: GKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GC
KTIKT + D GEYMD +FQ+Y++E I QLSAPGTPQQN VSERRNRTLLDMVRSM+SYA LP+SFWG G
Subjt: GKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GC
Query: KPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LILD---------------------
K SL +F IW CPAHVL NPKKL+ ++L+
Subjt: KPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LILD---------------------
Query: -----------------------GRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWT
GRV P RY+ LTET I D ++DPL++ +A VDKDEW+KAM+LE+ESMYF+ VWD VD P+GVKPIGCKW
Subjt: -----------------------GRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWT
Query: YKRKR
YKRKR
Subjt: YKRKR
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| A0A5D3BUN8 Gag/pol protein | 2.4e-124 | 46.93 | Show/hide |
Query: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
+L+K++E + AR+IM+SL+EMFG PS Q+ +A N+A + R + +++I KRK K
Subjt: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
Query: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
K P AV + R C + ++V ++ T ++ + FK L+D EMTLK IGR
Subjt: EKAPAQAVNMARER----PRSCL-----TRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGR
Query: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
LVK LL L+D SLPPCESCLE KMTKRPFTGKGYRAKEPLELIHS+LC PMNVKARG EYFISFIDDYS+YGYL+LM HKSEALEKFKE+KTEVE+L
Subjt: LVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESL
Query: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
L K IK L+ D GEYMD RFQDYMIEHGIQ QLSAPGTPQQN VSERRNRTLLDMVRSMMSYAQLPSSFWG G
Subjt: LGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------G
Query: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
KPSL +F IW CPAHVLVTNPKKL+ L+L
Subjt: CKPSLHYFCIWHCPAHVLVTNPKKLD--------------------------------------------------LIL---------------------
Query: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
GRVV QPNRYLGLTETQV IPDDGV+DPLSY QA N VDKD+WVKAMDLEMESMYF+ VW+ VD PEGVKPIGCKW YKR
Subjt: -------------------DGRVVIQPNRYLGLTETQVAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKR
Query: KRE
KR+
Subjt: KRE
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| A0A5D3DZL3 Gag/pol protein | 9.1e-124 | 47.29 | Show/hide |
Query: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
+L+K++E + AR+I +SL+EMFG PS Q+ +A+K +NARM++G V+EH+L+M+ FN+ + NG V E+SQ + LL+ + KRKG K
Subjt: VLTKRYETVEIAREIMNSLQEMFGLPSYQLHHDALKNFFNARMQEGHLVREHVLDMMNQFNIAEANGGVVFEQSQEPNLYLRLLQCGHSNKQIPKRKGDK
Query: EKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGRLVKTRLLTD
EK P A K + ++ + F+ L++GEMTLK IGRLVK LL +
Subjt: EKAPAQAVNMARERPRSCLTRTSVSTAMWMVTRRGTALVTLLRKREKRKGNDFKHLQDGEMTLK------------------------IGRLVKTRLLTD
Query: LEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQ
LEDDSLPPCESCLE KMTKR FTGKGYRAKEPLELIHS+LC PMNVK R EYFISFIDDYS+YGYL+LM +KSE LEKFKE+K EVE+LL K IK L+
Subjt: LEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQ
Query: LDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GCKPSLHYFC
D GEYMD RFQDYMI+H IQ QLSAP TPQQN VSERRNRTLLDMV SMMSYA LPSSFWG G KPSL +F
Subjt: LDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG---------------------------GCKPSLHYFC
Query: IWHCPAHVLVTNPKKLD--------------------------------------------------LILD------GRVV--IQPNRYLGLTET-----
IW C AHVLVTNPKKL+ L+L+ RVV + P+ + T T
Subjt: IWHCPAHVLVTNPKKLD--------------------------------------------------LILD------GRVV--IQPNRYLGLTET-----
Query: ---QVAIPD-DGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKRKRE
+ +P DG++DPLSY +A NYVDKD+WVKAM+LEMESMYF+ VW+ V+ PEGVKPIGCKW YKRKR+
Subjt: ---QVAIPD-DGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKRKRE
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 1.6e-24 | 30.37 | Show/hide |
Query: FKHLQDGE-MTLKIGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRA--KEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGH
F H+ DG+ + +K + + L + + S CE CL K + PF + K PL ++HS++C P+ YF+ F+D ++ Y +L+ +
Subjt: FKHLQDGE-MTLKIGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRA--KEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGH
Query: KSEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWGGCKPSLHYFC
KS+ F++F + E+ + L +D EY+ + + ++ GI + L+ P TPQ N VSER RT+ + R+M+S A+L SFWG + Y
Subjt: KSEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWGGCKPSLHYFC
Query: IWHCPAHVLVTNPK
I P+ LV + K
Subjt: IWHCPAHVLVTNPK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-32 | 36.51 | Show/hide |
Query: DFKHLQDGEMTLK-IGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHK
D H + G M+ K + L K L++ + ++ PC+ CL K + F R L+L++S++C PM +++ G +YF++FIDD S+ +++++ K
Subjt: DFKHLQDGEMTLK-IGRLVKTRLLTDLEDDSLPPCESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHK
Query: SEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG
+ + F++F VE G+ +K L+ D GEY + F++Y HGI+ + + PGTPQ N V+ER NRT+++ VRSM+ A+LP SFWG
Subjt: SEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFWG
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-03 | 34.85 | Show/hide |
Query: VAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKRKRE
V I DD +P S + ++ +K++ +KAM EMES+ + + V+ P+G +P+ CKW +K K++
Subjt: VAIPDDGVDDPLSYHQAKNYVDKDEWVKAMDLEMESMYFSQVWDHVDPPEGVKPIGCKWTYKRKRE
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 7.7e-11 | 26.09 | Show/hide |
Query: CESCLEDKMTKRPFTGKGYRAK-----EPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSE--ALEKFKEFKTEVESLLGKTIKTLQL
C CL K TK KG R K EP + +H+++ P++ + YFISF D+ +++ +++ + + E L F +++ + +Q+
Subjt: CESCLEDKMTKRPFTGKGYRAK-----EPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSE--ALEKFKEFKTEVESLLGKTIKTLQL
Query: DGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFW
D EY +K + GI + + + V+ER NRTLL+ R+++ + LP+ W
Subjt: DGSGEYMDKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFW
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.5e-17 | 29.87 | Show/hide |
Query: CESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYM
C CL +K K PF+ + PLE I+S++ + + Y++ F+D +++Y +L+ + KS+ E F FK +E+ I T D GE++
Subjt: CESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYM
Query: DKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFW
+Y +HGI S P TP+ N +SER++R +++ +++S+A +P ++W
Subjt: DKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFW
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.0e-18 | 31.82 | Show/hide |
Query: CESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYM
C C +K K PF+ + +PLE I+S++ + Y++ F+D +++Y +L+ + KS+ + F FK+ VE+ I TL D GE++
Subjt: CESCLEDKMTKRPFTGKGYRAKEPLELIHSNLCCPMNVKARGVCEYFISFIDDYSQYGYLHLMGHKSEALEKFKEFKTEVESLLGKTIKTLQLDGSGEYM
Query: DKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFW
R DY+ +HGI S P TP+ N +SER++R +++M +++S+A +P ++W
Subjt: DKRFQDYMIEHGIQFQLSAPGTPQQNDVSERRNRTLLDMVRSMMSYAQLPSSFW
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