; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022450 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022450
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr7:29341009..29355283
RNA-Seq ExpressionLag0022450
SyntenyLag0022450
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]9.9e-2657.6Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG +I  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2556.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2556.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2556.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2556.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein6.3e-2656.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
A0A5A7TWB9 Gag/pol protein6.3e-2656.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
A0A5A7TYF5 Gag/pol protein4.8e-2657.6Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG +I  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
A0A5A7TZD7 Gag/pol protein6.3e-2656.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
A0A5A7V4M1 Gag/pol protein6.3e-2656.8Show/hide
Query:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN
        KKKK G+GNK +  A    K KAK A KG CFHCN + HWKRNCPKYLA+KKKAK  KYDLLV+E CLV+NDDSAWI+DSGATNHV      ++ +R+L 
Subjt:  KKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHV-----RVAQYRRLN

Query:  KPPIS-GIGTGVIIGRSASVLGSNR
           ++  +GTG ++  SA  +G  R
Subjt:  KPPIS-GIGTGVIIGRSASVLGSNR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGAGAAGAAGATTAAAAAAAAAAAAGTCGCCGGAAAAAGTCATCGGTGATTGCCGGAAAAGTGATCGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGACGGTGGTCGTCGGAAAAGTCGTCGGTGATTGCCGAAA
AGTGGCCAGAAAGTCGACGGCGGTCGTCGGAAAAGTCGTCGGTGATTTCCGGAAAAGTGGTCGGAAAGTCGACGGCGGTCGTCGGAAAAGTCGTCGGTGATTTCCGGAAA
AGTGGTCGGAAAGTCGACGGGGGTCGTTGGAAAAGTTGTTGGTGGTCGCCGGAAAAGTCGTCGGCTGATCGTCGTCGGGAAGGAGTGAATTCCATCTTGTACGATTATGT
TCCCAGCTCCCCATTCGGTCTTGTCCCCAAAGTGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGCCTGCTGAAAGTTCCAGATTAAGCTCCAGTACGTGGG
TGGAGTTGTATATTGAGTTTGTCCATATTGTTATTTTCCAAACGAGTTATGCCAGGGCGGCACCTCGTGAAATTTATAAATCTAGAAATCAAGGAAATTTTCATAAATTG
GAGAAAGAAGATTTTCAGGAATCTCATTGGTGCTTGATGGCTCACATGGATGATGAAAGTGACGATGAAGAGGTAAGTGCACAAAAATTGGATAAAATTATTGACATGGG
TAAACCGTTAAATGACAAAAGAGGTCTTGGTTATGTTGATGAGAGTGTTACTCCATCAAATTCTAAAACTATTTTTGTTAAAGCATCTTCTAGTATGCCTAGTGACGCTT
TGCCAAATGTTTTGCTAAAAGATCTTGCGTATCTCGGTATTCTGTCGGAAAGCTCAGTTGCGGCCGAATATTGGGCACAAAATCTCTGTGTGCACTGCCTTGACAACACT
AAGAGTTTCCAGAAGAAGAAGAAGAAAAGTGGAAAAGGGAATAAAGTTGACACTCCTGCCACTGCTGCCCGAAAAGGGAAGGCCAAGGTTGCAGACAAAGGAAAATGTTT
CCACTGCAACGTTGATAGACACTGGAAGAGAAATTGTCCTAAGTACCTAGCCAAGAAGAAGAAAGCCAAAGATGATAAATATGATTTACTTGTAATTGAGCCTTGTTTAG
TGAAGAATGATGATTCTGCATGGATACTTGATTCAGGGGCCACTAATCATGTGAGAGTGGCTCAGTATCGCCGACTCAATAAGCCTCCCATTTCAGGGATAGGAACGGGG
GTGATAATCGGTCGGTCGGCATCGGTTTTGGGCTCAAACCGACACCGACCACCGACTCCTCGGTTTGAGTCGGTCGGTGAATGTCGGTTTTGGGAGTTCTATGAGACCGA
CCGACCGACCACAAACAAAAATCGGTCGGTTTCGGTCGGTTTTGGAAGTTCCATCGATGACGTCGTTGTTCTGGTAAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATA
GTAGGGAAGACACTAGAGGTGGTCCACACACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGATGATCGGCCTGTTGGCTTGTTGATCTTC
TTGGATGATCGGCCTGTTGGCTTGTTGATCTTCTTGGATGATCGTTCTGCTGACTTGATGATCTTTTGGATCGGCCTGTTGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGAGAAGAAGATTAAAAAAAAAAAAGTCGCCGGAAAAAGTCATCGGTGATTGCCGGAAAAGTGATCGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGACGGTGGTCGTCGGAAAAGTCGTCGGTGATTGCCGAAA
AGTGGCCAGAAAGTCGACGGCGGTCGTCGGAAAAGTCGTCGGTGATTTCCGGAAAAGTGGTCGGAAAGTCGACGGCGGTCGTCGGAAAAGTCGTCGGTGATTTCCGGAAA
AGTGGTCGGAAAGTCGACGGGGGTCGTTGGAAAAGTTGTTGGTGGTCGCCGGAAAAGTCGTCGGCTGATCGTCGTCGGGAAGGAGTGAATTCCATCTTGTACGATTATGT
TCCCAGCTCCCCATTCGGTCTTGTCCCCAAAGTGGTAGAGATCGAGCTCCCGGTGTCTGATACACTGCCAACGCCTGCTGAAAGTTCCAGATTAAGCTCCAGTACGTGGG
TGGAGTTGTATATTGAGTTTGTCCATATTGTTATTTTCCAAACGAGTTATGCCAGGGCGGCACCTCGTGAAATTTATAAATCTAGAAATCAAGGAAATTTTCATAAATTG
GAGAAAGAAGATTTTCAGGAATCTCATTGGTGCTTGATGGCTCACATGGATGATGAAAGTGACGATGAAGAGGTAAGTGCACAAAAATTGGATAAAATTATTGACATGGG
TAAACCGTTAAATGACAAAAGAGGTCTTGGTTATGTTGATGAGAGTGTTACTCCATCAAATTCTAAAACTATTTTTGTTAAAGCATCTTCTAGTATGCCTAGTGACGCTT
TGCCAAATGTTTTGCTAAAAGATCTTGCGTATCTCGGTATTCTGTCGGAAAGCTCAGTTGCGGCCGAATATTGGGCACAAAATCTCTGTGTGCACTGCCTTGACAACACT
AAGAGTTTCCAGAAGAAGAAGAAGAAAAGTGGAAAAGGGAATAAAGTTGACACTCCTGCCACTGCTGCCCGAAAAGGGAAGGCCAAGGTTGCAGACAAAGGAAAATGTTT
CCACTGCAACGTTGATAGACACTGGAAGAGAAATTGTCCTAAGTACCTAGCCAAGAAGAAGAAAGCCAAAGATGATAAATATGATTTACTTGTAATTGAGCCTTGTTTAG
TGAAGAATGATGATTCTGCATGGATACTTGATTCAGGGGCCACTAATCATGTGAGAGTGGCTCAGTATCGCCGACTCAATAAGCCTCCCATTTCAGGGATAGGAACGGGG
GTGATAATCGGTCGGTCGGCATCGGTTTTGGGCTCAAACCGACACCGACCACCGACTCCTCGGTTTGAGTCGGTCGGTGAATGTCGGTTTTGGGAGTTCTATGAGACCGA
CCGACCGACCACAAACAAAAATCGGTCGGTTTCGGTCGGTTTTGGAAGTTCCATCGATGACGTCGTTGTTCTGGTAAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATA
GTAGGGAAGACACTAGAGGTGGTCCACACACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGATGATCGGCCTGTTGGCTTGTTGATCTTC
TTGGATGATCGGCCTGTTGGCTTGTTGATCTTCTTGGATGATCGTTCTGCTGACTTGATGATCTTTTGGATCGGCCTGTTGGCTTGA
Protein sequenceShow/hide protein sequence
MKMRRRLKKKKSPEKVIGDCRKSDRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWSSEKSSVIAEKWPESRRRSSEKSSVISGKVVGKSTAVVGKVVGDFRK
SGRKVDGGRWKSCWWSPEKSSADRRREGVNSILYDYVPSSPFGLVPKVVEIELPVSDTLPTPAESSRLSSSTWVELYIEFVHIVIFQTSYARAAPREIYKSRNQGNFHKL
EKEDFQESHWCLMAHMDDESDDEEVSAQKLDKIIDMGKPLNDKRGLGYVDESVTPSNSKTIFVKASSSMPSDALPNVLLKDLAYLGILSESSVAAEYWAQNLCVHCLDNT
KSFQKKKKKSGKGNKVDTPATAARKGKAKVADKGKCFHCNVDRHWKRNCPKYLAKKKKAKDDKYDLLVIEPCLVKNDDSAWILDSGATNHVRVAQYRRLNKPPISGIGTG
VIIGRSASVLGSNRHRPPTPRFESVGECRFWEFYETDRPTTNKNRSVSVGFGSSIDDVVVLVRLPQVVLGPENSREDTRGGPHTVRDQRNQRELLNRSPKDDRPVGLLIF
LDDRPVGLLIFLDDRSADLMIFWIGLLA