CuGenDBv2

Gene ID	Lag0022454
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr7:29445650..29446252
RNA-Seq Expression	Lag0022454
Synteny	Lag0022454
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAF7129943.1 hypothetical protein RHSIM_Rhsim10G0167400 [Rhododendron simsii]

6.0e-39

46.2

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M C SSVT+S L+NG PS   +PSRG RQG PLSPYLFL+C EGFS +L++ E   ++   +     P +SHL FADD+++F +AS KE      ++  Y
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
          ASGQL+N +K A   SKN G  L  +   ++ +P    LG YLG+ + N K+K+ LF  +KDKV  +L  WKEKL +  GKE
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]

2.1e-44

49.73

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        MNC  SV F+ L+NG P D+F P+RG RQG PLSPYLF++C EG S L+  EE   N+   K N  CP +SHLF+ADD LLFF+AS   C   KG++ +Y
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKA-SGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         KA SGQ +N +K  ++ SKN    +     + L V  T+SLG YLG+ S   +NK  +F  +KD+VWK LQ WK KLFS  G+E
Subjt:  GKA-SGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

XP_030502375.1 uncharacterized protein LOC115717530 [Cannabis sativa]

5.5e-40

45.11

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M+C ++ +FS L+NG    +  PSRG RQG PLSPYLFL+C+EGFS LL+ ++ I NL  FK   H P ++HLFFADDSLLF +A+E+ C   K V+ TY
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         KASGQ +N  K     S N     ++   + L +P  +    YLG+ S + ++K  +F+ +K+K+WK +  W EK F A GKE
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

XP_030505385.1 uncharacterized protein LOC115720373 [Cannabis sativa]

6.7e-38

44.57

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M+C ++  FS L+NG  +    P RG RQG PLSPYLFL+C EG S LL+RE+ + NL  FK     P +SHL FADDSLL  +A E  C   K V+ TY
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         +ASGQL+N +K     S N     ++   + L +P ++    YLG+ S + ++K  LF+ +K+++WK +Q W EKLFSA G+E
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

XP_030923215.1 uncharacterized protein LOC115950106 [Quercus lobata]

6.7e-38

46.2

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M C ++V++S L+NG PS    PSRG RQG P+SPYLFLL TEG   L+ +  +  ++       + P L+HLFFADDSLLF+RAS +ECN  + +++TY
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         +ASGQ +N EK     SKN G  ++     +LGVP  K    YLG+ S   K K    A +KD++W  LQ WKEKL S  G+E
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9HME5 Reverse transcriptase domain-containing protein

6.5e-39

48.37

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        MNC +SV++S +VNG P+    P+RG RQG PLSPYLFLLC EG S LL +     +L     +   P ++HLFFADDSLLF +A+ +EC I    +S Y
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         KASGQLVN EK +   S+N    L++    ILGVP  K    YLG+ S   ++K   F ++K+KVWK +  WKEKL S  GKE
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

A0A6J1DUG8 uncharacterized protein LOC111024135

1.0e-44

49.73

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        MNC  SV F+ L+NG P D+F P+RG RQG PLSPYLF++C EG S L+  EE   N+   K N  CP +SHLF+ADD LLFF+AS   C   KG++ +Y
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKA-SGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         KA SGQ +N +K  ++ SKN    +     + L V  T+SLG YLG+ S   +NK  +F  +KD+VWK LQ WK KLFS  G+E
Subjt:  GKA-SGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

A0A803PIC3 Uncharacterized protein

1.5e-40

46.74

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M C S+ +FS L+N     +  PSRG RQG PLSPYLFL+C+EGFS LL  EES+  L  FK     P +SHLFFADD+LLFF+A+E  C   K V+ TY
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         +ASGQ++N +K     S N   G ++   + L +P ++    YLG+ S + ++K  LF+ +KDK+WK +  W EK+FSA G+E
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

A0A803PQ30 Uncharacterized protein

2.6e-40

45.11

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M+C ++ +FS L+NG    +  PSRG RQG PLSPYLFL+C+EGFS LL+ ++ I NL  FK   H P ++HLFFADDSLLF +A+E+ C   K V+ TY
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         KASGQ +N  K     S N     ++   + L +P  +    YLG+ S + ++K  +F+ +K+K+WK +  W EK F A GKE
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

A0A803QC75 Uncharacterized protein

2.0e-40

44.57

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Query:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY
        M+C ++  FS ++NG    +  PSRG RQG PLSPYLFL+C+EGFS LL+ E+  +NL  FK   H P ++HLFFADDSLLF +A+E+ C   K V+ TY
Subjt:  MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTY

Query:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE
         KASGQ +N +K     S N     ++   + L +P  +    YLG+ S + ++K  +F+ +K+++WK +  W EK+FSA GKE
Subjt:  GKASGQLVNFEKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKE

SwissProt top hits

e value

%identity

Alignment

P11369 LINE-1 retrotransposable element ORF2 protein

6.3e-07

23.56

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Query:  FSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTYGKA
        +S    +  VNG   +      G RQG PLSPYLF +  E  +  +++++ I  +   K       +     ADD +++    +        +I+++G+ 
Subjt:  FSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTYGKA

Query:  SGQLVNFEK-FAYMTSKNVGRGLEIKCG----------KILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKV--WKTLQL-WKEKL------------
         G  +N  K  A++ +KN     EI+            K LGV  TK + +        +KN   L  ++K+ +  WK L   W  ++            
Subjt:  SGQLVNFEK-FAYMTSKNVGRGLEIKCG----------KILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKV--WKTLQL-WKEKL------------

Query:  --FSAVGKETPNNIFKEIDGICAKF
          F+A+  + P   F E++G   KF
Subjt:  --FSAVGKETPNNIFKEIDGICAKF

P92555 Uncharacterized mitochondrial protein AtMg01250

8.5e-12

47.06

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Query:  LVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDS
        ++NG+P     PSRG RQG PLSPYLF+LCTE  S L +R +    L   + +++ P ++HL FADD+
Subjt:  LVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDS

Arabidopsis top hits

e value

%identity

Alignment

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)

6.1e-13

47.06

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Query:  LVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDS
        ++NG+P     PSRG RQG PLSPYLF+LCTE  S L +R +    L   + +++ P ++HL FADD+
Subjt:  LVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDS

Sequences

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CDS sequence

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ATGAATTGCTTCTCTTCAGTTACTTTCTCAGCCCTTGTCAATGGAAGTCCTAGCGATGATTTCAAGCCTAGCAGGGGGTTTAGGCAAGGGGTTCCTCTATCCCCTTACCT
ATTTCTGTTATGCACTGAAGGTTTCTCTACTCTCCTTAAAAGGGAAGAATCCATCTCAAATCTTTTTAGCTTTAAAACTAATCATCACTGCCCTTCCTTATCTCATTTGT
TTTTCGCTGATGATAGTCTTCTTTTTTTCAGGGCCTCCGAGAAGGAATGCAACATCACTAAAGGAGTGATATCTACATATGGGAAAGCTTCTGGACAGCTTGTAAATTTT
GAAAAATTTGCCTACATGACTAGTAAAAACGTGGGGAGAGGGCTTGAGATCAAGTGTGGCAAGATCTTAGGAGTCCCGTGGACCAAAAGCTTGGGGAATTACCTAGGGAT
GTCCTCCTCAAACAACAAAAACAAGAGCCACCTTTTTGCCAAGGTCAAGGACAAAGTCTGGAAAACTCTCCAACTGTGGAAGGAGAAACTTTTCTCTGCGGTGGGAAAGG
AAACTCCGAACAACATTTTCAAGGAAATTGATGGAATTTGCGCGAAATTTTAA

mRNA sequence

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Protein sequence

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MNCFSSVTFSALVNGSPSDDFKPSRGFRQGVPLSPYLFLLCTEGFSTLLKREESISNLFSFKTNHHCPSLSHLFFADDSLLFFRASEKECNITKGVISTYGKASGQLVNF
EKFAYMTSKNVGRGLEIKCGKILGVPWTKSLGNYLGMSSSNNKNKSHLFAKVKDKVWKTLQLWKEKLFSAVGKETPNNIFKEIDGICAKF

Lag0022454 (gene) of Sponge gourd (AG-4) v1 genome