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Lag0022458 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022458
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:29631328..29631933
RNA-Seq ExpressionLag0022458
SyntenyLag0022458
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-3546.04Show/hide
Query:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT
        ++ S+EK   IE++ EGW ++ R KK+K +   KES  +R+ +R  K Q+ K KKK+R+ K V EE +DF  P + +TLA++ P  FL D Q E   +V 
Subjt:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT

Query:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKSDGTKIPTSEAR-TCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQ
        CH ++V+E++ +P  S         LS F++ DLLSLPQE K++LINAL+ S  +    S A       CM+I FSDEDLLLGSK +NR L+VSGY+REQ
Subjt:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKSDGTKIPTSEAR-TCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQ

Query:  RV
        RV
Subjt:  RV

KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]4.8e-3646.63Show/hide
Query:  IEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVVDVVEDD
        IE++ EGWT++   KK+K +  +KESR +R+ +R  K Q+ K KKK+R+ K V EE +DF    + +TLA++ P  FL D Q E   ++ CH ++  E++
Subjt:  IEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVVDVVEDD

Query:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV
         +P  S        DLS F++ DLLSLPQE K++LINAL+ S    +  PT+   +    CM+I FSDEDLLLGSK +NRPL+VSGY+REQRV
Subjt:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.3e-3646Show/hide
Query:  SQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHV
        SQEK   IE++ EGWT++ R KK+K +  +KE R +R+ ++  K Q+ K KKK+R+ K + EE +DF    + +TLA++ P  FL D Q E   +V CH 
Subjt:  SQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHV

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV
        ++ +E++++P  S        DLS F++ DLLSLPQE K +LINAL+ S    +  PT+   +    CM+I FS EDLLLGSK +NRPL+VSGY+REQRV
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-3847.24Show/hide
Query:  QEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVV
        QEK  SIE + EGWT++ R KK+K +  +KE R +R+ +R  K Q+ K KKK+++ K + EE +DF    + +TLA + P  FL D Q E  E+V CH +
Subjt:  QEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVV

Query:  DVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV
        D +E++ +P  S        DL  F++ DLLSLPQE K++LINAL+ S    +  PT+   +    CM+I FSDEDLLLGSK +NRPL+VSGY+REQRV
Subjt:  DVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV

KAA0057705.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3545.32Show/hide
Query:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT
        ++ SQEK   IE++ EGW ++ R KK+K +  +KESR +R+ +R+ K Q+ K KKK+R+ K V EE +DF    + + LA++ P  FL D Q E   IV 
Subjt:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT

Query:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIRE
        CH ++  ++  +P  S        DLS F++ DLLSLPQE K++LINAL+ S    +  PT+  ++    CM+I FSDEDLLLGSK +  PL+VSGY+RE
Subjt:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIRE

Query:  QRV
        QRV
Subjt:  QRV

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein5.2e-3646.04Show/hide
Query:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT
        ++ S+EK   IE++ EGW ++ R KK+K +   KES  +R+ +R  K Q+ K KKK+R+ K V EE +DF  P + +TLA++ P  FL D Q E   +V 
Subjt:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT

Query:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKSDGTKIPTSEAR-TCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQ
        CH ++V+E++ +P  S         LS F++ DLLSLPQE K++LINAL+ S  +    S A       CM+I FSDEDLLLGSK +NR L+VSGY+REQ
Subjt:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKSDGTKIPTSEAR-TCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQ

Query:  RV
        RV
Subjt:  RV

A0A5A7UVV7 Retrotransposon gag protein6.8e-3645.32Show/hide
Query:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT
        ++ SQEK   IE++ EGW ++ R KK+K +  +KESR +R+ +R+ K Q+ K KKK+R+ K V EE +DF    + + LA++ P  FL D Q E   IV 
Subjt:  MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVT

Query:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIRE
        CH ++  ++  +P  S        DLS F++ DLLSLPQE K++LINAL+ S    +  PT+  ++    CM+I FSDEDLLLGSK +  PL+VSGY+RE
Subjt:  CHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIRE

Query:  QRV
        QRV
Subjt:  QRV

A0A5D3BE72 Ty3-gypsy retrotransposon protein3.2e-3847.24Show/hide
Query:  QEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVV
        QEK  SIE + EGWT++ R KK+K +  +KE R +R+ +R  K Q+ K KKK+++ K + EE +DF    + +TLA + P  FL D Q E  E+V CH +
Subjt:  QEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVV

Query:  DVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV
        D +E++ +P  S        DL  F++ DLLSLPQE K++LINAL+ S    +  PT+   +    CM+I FSDEDLLLGSK +NRPL+VSGY+REQRV
Subjt:  DVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV

A0A5D3BSG5 Uncharacterized protein6.1e-3746Show/hide
Query:  SQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHV
        SQEK   IE++ EGWT++ R KK+K +  +KE R +R+ ++  K Q+ K KKK+R+ K + EE +DF    + +TLA++ P  FL D Q E   +V CH 
Subjt:  SQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHV

Query:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV
        ++ +E++++P  S        DLS F++ DLLSLPQE K +LINAL+ S    +  PT+   +    CM+I FS EDLLLGSK +NRPL+VSGY+REQRV
Subjt:  VDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV

A0A5D3E3J4 Uncharacterized protein2.3e-3646.63Show/hide
Query:  IEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVVDVVEDD
        IE++ EGWT++   KK+K +  +KESR +R+ +R  K Q+ K KKK+R+ K V EE +DF    + +TLA++ P  FL D Q E   ++ CH ++  E++
Subjt:  IEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVVDVVEDD

Query:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV
         +P  S        DLS F++ DLLSLPQE K++LINAL+ S    +  PT+   +    CM+I FSDEDLLLGSK +NRPL+VSGY+REQRV
Subjt:  DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKS--DGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAGTATGATTCCATCGAAGATGAAAGCGAAGGTTGGACCCTTATCGTTCGTTGCAAAAAGCAAAAGCAAAGTTACGCACGAAAGGAGTCCCG
CCTATTTCGAGACAACAAAAGAAAGGTTAAATTCCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTCTGGCAGAATACTGCCCAAGGCACTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAATTGTCACATGTCACGTTGTGGATGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAA
TGCATTGATAAAGTCCGATGGTACAAAGATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGACTATAGGGTTTTCCGATGAAGATTTGCTGCTAGGGTCAA
AGCCTTACAATAGACCTTTATTCGTCTCGGGATACATCCGAGAACAGAGGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAGTATGATTCCATCGAAGATGAAAGCGAAGGTTGGACCCTTATCGTTCGTTGCAAAAAGCAAAAGCAAAGTTACGCACGAAAGGAGTCCCG
CCTATTTCGAGACAACAAAAGAAAGGTTAAATTCCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
CACAACCCATAACTCTGGCAGAATACTGCCCAAGGCACTTTCTCGATGATAGTCAAGGAGAGGCACTTGAAATTGTCACATGTCACGTTGTGGATGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAA
TGCATTGATAAAGTCCGATGGTACAAAGATCCCAACCTCCGAGGCACGCACATGTGCTTCGTGTTGCATGACTATAGGGTTTTCCGATGAAGATTTGCTGCTAGGGTCAA
AGCCTTACAATAGACCTTTATTCGTCTCGGGATACATCCGAGAACAGAGGGTATAA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIEDESEGWTLIVRCKKQKQSYARKESRLFRDNKRKVKFQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYCPRHFLDDSQGEALEIVTCHVVDVVEDD
DVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIKSDGTKIPTSEARTCASCCMTIGFSDEDLLLGSKPYNRPLFVSGYIREQRV