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Lag0022460 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022460
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr7:29667313..29667659
RNA-Seq ExpressionLag0022460
SyntenyLag0022460
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3462149.1 reverse transcriptase [Gossypium australe]2.3e-0846.67Show/hide
Query:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRLHNLNDVS
        KE   + +QSFS+ HID+++   NT  +WRFTGFYGSP    R+ SW+L++ LH++++ S
Subjt:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRLHNLNDVS

KAB1671580.1 hypothetical protein, partial [Gossypium barbadense]1.5e-0739.13Show/hide
Query:  LRSLRTIMRNHNLDFVFLSESKSK----------------KEEFDVVIQSFSKCHIDSLISKDNTR-WRFTGFYGSPEVESRQASWELIRRL
        +R L+ ++R HN D +FLSE+K                  KE  +V IQSFSK HIDS+++ +N +  R TGFYG      R +SW+++RR+
Subjt:  LRSLRTIMRNHNLDFVFLSESKSK----------------KEEFDVVIQSFSKCHIDSLISKDNTR-WRFTGFYGSPEVESRQASWELIRRL

KAG8489752.1 hypothetical protein CXB51_017987 [Gossypium anomalum]1.5e-0754.72Show/hide
Query:  VVIQSFSKCHID-SLISKDNTRWRFTGFYGSPEVESRQASWELIRRLHNLNDV
        V +QSFSK HID  +  ++N+RWRFTGFYG+PEV ++  +WEL+RRL   N +
Subjt:  VVIQSFSKCHID-SLISKDNTRWRFTGFYGSPEVESRQASWELIRRLHNLNDV

XP_023923071.1 uncharacterized protein LOC112034488 [Quercus suber]8.7e-0851.85Show/hide
Query:  KEEFDVVIQSFSKCHIDSLISKD-NTRWRFTGFYGSPEVESRQASWELIRRLHN
        KEEFD+ I++FSK HID+ ++K+ N  WRFTGFYG P+ + R  +W  +R L N
Subjt:  KEEFDVVIQSFSKCHIDSLISKD-NTRWRFTGFYGSPEVESRQASWELIRRLHN

XP_030970107.1 uncharacterized protein LOC115990412 [Quercus lobata]1.5e-0750.98Show/hide
Query:  EFDVVIQSFSKCHIDSLISKDNTRWRFTGFYGSPEVESRQASWELIRRLHN
        + D+ +Q++S  HID+LI KDN  WRFTGFYG PE + ++ SW+L++ LH+
Subjt:  EFDVVIQSFSKCHIDSLISKDNTRWRFTGFYGSPEVESRQASWELIRRLHN

TrEMBL top hitse value%identityAlignment
A0A5B6UWI4 Reverse transcriptase1.1e-0846.67Show/hide
Query:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRLHNLNDVS
        KE   + +QSFS+ HID+++   NT  +WRFTGFYGSP    R+ SW+L++ LH++++ S
Subjt:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRLHNLNDVS

A0A5B6VYW9 Reverse transcriptase9.4e-0854.72Show/hide
Query:  KEEFDVVIQSFSKCHIDSLISK--DNTRWRFTGFYGSPEVESRQASWELIRRL
        K E  + +Q+FS+ HID L+SK  D  +WRFTGFYGSP  + R+ SW L+RRL
Subjt:  KEEFDVVIQSFSKCHIDSLISK--DNTRWRFTGFYGSPEVESRQASWELIRRL

A0A5B6W1U2 Reverse transcriptase9.4e-0854.72Show/hide
Query:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRL
        KEE +V ++SFSK HID ++ ++NT   WRFTGFYGSP   ++  SW L+RRL
Subjt:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRL

A0A5J5NFM6 Endo/exonuclease/phosphatase domain-containing protein (Fragment)7.2e-0839.13Show/hide
Query:  LRSLRTIMRNHNLDFVFLSESKSK----------------KEEFDVVIQSFSKCHIDSLISKDNTR-WRFTGFYGSPEVESRQASWELIRRL
        +R L+ ++R HN D +FLSE+K                  KE  +V IQSFSK HIDS+++ +N +  R TGFYG      R +SW+++RR+
Subjt:  LRSLRTIMRNHNLDFVFLSESKSK----------------KEEFDVVIQSFSKCHIDSLISKDNTR-WRFTGFYGSPEVESRQASWELIRRL

A0A7J9CIA7 DUF4283 domain-containing protein1.2e-0756.6Show/hide
Query:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRL
        K E  V ++SFSK HID LI +DN    WRFTGFYGSP V ++  SW L+R+L
Subjt:  KEEFDVVIQSFSKCHIDSLISKDNT--RWRFTGFYGSPEVESRQASWELIRRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCGCTCCTTGCGCACGATAATGCGTAATCATAACCTCGATTTTGTGTTCCTGTCTGAATCAAAAAGTAAGAAGGAGGAGTTTGACGTGGTGATACAATCCTTTTC
TAAATGTCATATCGACTCTTTGATATCCAAAGATAACACTCGTTGGAGGTTCACGGGGTTCTACGGTAGTCCTGAGGTGGAGAGCAGACAAGCATCTTGGGAGCTTATTA
GAAGATTGCATAATTTAAATGACGTATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCGCTCCTTGCGCACGATAATGCGTAATCATAACCTCGATTTTGTGTTCCTGTCTGAATCAAAAAGTAAGAAGGAGGAGTTTGACGTGGTGATACAATCCTTTTC
TAAATGTCATATCGACTCTTTGATATCCAAAGATAACACTCGTTGGAGGTTCACGGGGTTCTACGGTAGTCCTGAGGTGGAGAGCAGACAAGCATCTTGGGAGCTTATTA
GAAGATTGCATAATTTAAATGACGTATCGTGA
Protein sequenceShow/hide protein sequence
MLRSLRTIMRNHNLDFVFLSESKSKKEEFDVVIQSFSKCHIDSLISKDNTRWRFTGFYGSPEVESRQASWELIRRLHNLNDVS