CuGenDBv2

Gene ID	Lag0022471
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr7:29945256..29945603
RNA-Seq Expression	Lag0022471
Synteny	Lag0022471
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-48

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-48

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-48

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-48

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

TYK10337.1 gag/pol protein [Cucumis melo var. makuwa]

1.8e-48

84.35

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        MEVEYVAACE  KEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMYEK
        E HLE+LGLRDMY K
Subjt:  ESHLEALGLRDMYEK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKM4 Gag/pol protein

5.2e-49

85.84

Show/hide

Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

A0A5A7TZD0 Gag/pol protein

5.2e-49

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

A0A5A7UYE8 Gag/pol protein

5.2e-49

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

A0A5A7V1F5 Gag/pol protein

6.8e-49

85.84

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Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        ME EYVAACEAAKEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMY
        E HLE+LGLRDMY
Subjt:  ESHLEALGLRDMY

A0A5D3CEF2 Gag/pol protein

8.9e-49

84.35

Show/hide

Query:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF
        MEVEYVAACE  KEAVWLRKFL D+E +PNM+ PITLYCDNSGAVANSK+PRSHKRGKHIERKYHLIREIV RGDVIVTKIAS HNI DPF K LT+KVF
Subjt:  MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVF

Query:  ESHLEALGLRDMYEK
        E HLE+LGLRDMY K
Subjt:  ESHLEALGLRDMYEK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

5.8e-13

37.04

Show/hide

Query:  EVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVFE
        E EY+A  EA +EA+WL+  LT +     +  PI +Y DN G ++ +  P  HKR KHI+ KYH  RE V    + +  I + + + D F K L +  F 
Subjt:  EVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVFE

Query:  SHLEALGL
           + LGL
Subjt:  SHLEALGL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-12

36.11

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Query:  EVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVFE
        E EY+AA E  KE +WL++FL ++      +    +YCD+  A+  SK    H R KHI+ +YH IRE+V    + V KI++  N  D   K +    FE
Subjt:  EVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVFE

Query:  SHLEALGL
           E +G+
Subjt:  SHLEALGL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGGTCGAATATGTAGCCGCTTGCGAAGCAGCAAAAGAGGCAGTATGGCTCAGGAAGTTCCTAACTGACATGGAATTCATTCCGAATATGCATTTTCCTATCACCTT
GTATTGTGATAATAGCGGCGCAGTTGCAAACTCAAAGAAACCTCGCAGCCATAAGAGAGGCAAGCACATCGAAAGGAAATACCATCTCATTAGGGAGATTGTGCACCGAG
GAGACGTGATCGTCACGAAGATAGCGTCGGCGCACAACATTACTGATCCATTCAAGAAGGCTCTCACGTCTAAAGTATTCGAGAGTCATCTAGAAGCTCTAGGTCTGCGA
GATATGTACGAGAAATAA

mRNA sequence

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Protein sequence

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MEVEYVAACEAAKEAVWLRKFLTDMEFIPNMHFPITLYCDNSGAVANSKKPRSHKRGKHIERKYHLIREIVHRGDVIVTKIASAHNITDPFKKALTSKVFESHLEALGLR
DMYEK

Lag0022471 (gene) of Sponge gourd (AG-4) v1 genome