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Lag0022478 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022478
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:30191501..30191995
RNA-Seq ExpressionLag0022478
SyntenyLag0022478
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.3e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN ++  + S S +  + +  DVMSVMM D    E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI++L+K+V+E+D EIA+L+ QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.3e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN ++  + S S +  + +  DVMSVMM D    E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI++L+K+V+E+D EIA+L+ QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.3e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN ++  + S S +  + +  DVMSVMM D    E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI++L+K+V+E+D EIA+L+ QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.3e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN ++  + S S +  + +  DVMSVMM D    E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI++L+K+V+E+D EIA+L+ QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.3e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+SK +A+S++Y GPITRSRSK      +Q   IA  +L++ +ES +  I   EN ++  + S S +  + +  DVMSVMM D    E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI++L+K+V+E+D EIA+L+ QM++R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein7.7e-2245.24Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+S  + +S++Y GPITRSRSK    E +Q   +A ++L++ IES +  I   EN ++    S S +  + +  DV SVMM D  T E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI+ L+K VEE+D EI + R Q+ +R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

A0A5A7VCU1 Ty3-gypsy retrotransposon protein7.7e-2244.64Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+S+ + +S+ Y GPITR+RSK    E +Q   +   +L++ +ES +  I   EN ++    S S +  +    DVMSVMMTD  T+E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI+ L+K+VEE+D EI +LR QM++R+  ESSQT  +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

A0A5A7VH30 Ty3-gypsy retrotransposon protein4.5e-2244.31Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S + +SK +A+S+SY G +T+S  K +  E  Q  V+  K L + IES +  I   +N +F    S S   ++ S L+V+SVMM D  T+E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQQL
        +KI+ L+K++EE+D EIA+L++Q+++ + AESS+TPA+K  DKGK++ Q+ Q+Q S S+ SLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQD-QSQHSASIASLSVQQL

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.1e-2347.02Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++A+S  + +SN+Y GPITRSRSK    E +Q   +A  +L++ +ES +  I   EN ++    S S +  + +  DVMSVMM D  T E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        +KI+ L+K VEE+D EI +LR QM +R+ AESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

A0A5D3DIN4 Ty3-gypsy retrotransposon protein7.7e-2245.24Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE
        M S++ +SK +A+S+SY+G +T+S  K +  E  Q  V+  K L + IES +  I   +N +F      S   ++ S L+V+SVMM D  T+E  MVE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVE

Query:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL
        KKI+ L+K+VEE+D EIA+L++QM++ + AESS+TP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLRNQMESRDVAESSQTPAIK--DKGKIIAQDQ--SQHSASIASLSVQQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCGAAGAAGCTTCTTCAAAAATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCC
TGTCATTGCAAACAAGATGTTGAGACGTACGATAGAATCTTCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGTTTGGCAAATTCATCTCCTATTCTCAACAACCAA
ACGAAACATCCAGTCTTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTC
GAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATCATTGCACA
AGATCAGTCACAACATTCCGCTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCGAAGAAGCTTCTTCAAAAATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGTAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCC
TGTCATTGCAAACAAGATGTTGAGACGTACGATAGAATCTTCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGTTTGGCAAATTCATCTCCTATTCTCAACAACCAA
ACGAAACATCCAGTCTTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGTTGAAGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTC
GAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATCATTGCACA
AGATCAGTCACAACATTCCGCTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG
Protein sequenceShow/hide protein sequence
MTSEEASSKIAASSNSYVGPITRSRSKETQHEDNQTPVIANKMLRRTIESSQLEIATAENLMFGKFISYSQQPNETSSLDVMSVMMTDAGTSEERMVEVEKKISMLLKMV
EEKDQEIASLRNQMESRDVAESSQTPAIKDKGKIIAQDQSQHSASIASLSVQQL