; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022485 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022485
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr7:30363519..30365729
RNA-Seq ExpressionLag0022485
SyntenyLag0022485
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-1863.04Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        +SM   EEENQC MST  R SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS + SRMKRK SV INTEG
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.7e-1863.04Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        +SM   EEENQC  ST  R SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEG
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]8.7e-1863.04Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        +SM   EEENQC  ST  R SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEG
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]6.7e-1864.44Show/hide
Query:  MTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        M   EEENQC  ST TR SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+ +SSRMKRK SV INTEG
Subjt:  MTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.7e-1847.97Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEGYVGSL---
        +SMT  EEENQC     TR S F+RLS+ST KK R STSVFDRLK+T+DQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEG V  L   
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEGYVGSL---

Query:  --KKTLSSVSINKKRFFAAVPSLQVRGSL--HCTLLRCPSPSSKVLRC
          ++TL    + + R F  V   ++   +  H   LR  S SS  + C
Subjt:  --KKTLSSVSINKKRFFAAVPSLQVRGSL--HCTLLRCPSPSSKVLRC

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.5e-1863.04Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        +SM   EEENQC MST  R SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS + SRMKRK SV INTEG
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

A0A5A7TQ06 Retrotransposon gag protein4.2e-1863.04Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        +SM   EEENQC  ST  R SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEG
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

A0A5A7URU7 Gag protease polyprotein3.2e-1864.44Show/hide
Query:  MTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        M   EEENQC  ST TR SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+ +SSRMKRK SV INTEG
Subjt:  MTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

A0A5A7V7A0 Retrotransposon gag protein4.2e-1847.97Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEGYVGSL---
        +SMT  EEENQC     TR S F+RLS+ST KK R STSVFDRLK+T+DQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEG V  L   
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEGYVGSL---

Query:  --KKTLSSVSINKKRFFAAVPSLQVRGSL--HCTLLRCPSPSSKVLRC
          ++TL    + + R F  V   ++   +  H   LR  S SS  + C
Subjt:  --KKTLSSVSINKKRFFAAVPSLQVRGSL--HCTLLRCPSPSSKVLRC

A0A5D3BBF9 Gag protease polyprotein4.2e-1863.04Show/hide
Query:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG
        +SM   EEENQC  ST  R SAF+RLS+ST KK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEG
Subjt:  MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGACCGCGACTGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACACCAAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAGG
TTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGTTGCGTTGTTC
CTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTT
CGATGGTTCTCACGCAACTTTGCTGGAGTTTCTTCTCCCCAAGTTCCAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCG
TTGAAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAA
GGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCATCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTC
TCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCGCAGTTCCTT
CCTCCAAGTTCGAAGGTTCTCACGAGTTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACG
TCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTT
CGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAGT
TCGAAGGTTCTCACGTGTTTCGCTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCG
CTGCAGATCCTTCCTCCAAGTTCAAAGGTTACCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGC
GATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGT
TCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAAT
TCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTC
TCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACACACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGC
GCTACTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGACCGCGACTGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACACCAAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAGG
TTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGTTGCGTTGTTC
CTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTT
CGATGGTTCTCACGCAACTTTGCTGGAGTTTCTTCTCCCCAAGTTCCAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACTCGCTGCG
TTGAAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGTTCCCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAA
GGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCATCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTC
TCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCGCAGTTCCTT
CCTCCAAGTTCGAAGGTTCTCACGAGTTTCGTTGCAGTTCCTTCCTCACAATTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACG
TCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTT
CGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAGT
TCGAAGGTTCTCACGTGTTTCGCTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCG
CTGCAGATCCTTCCTCCAAGTTCAAAGGTTACCACGTCGCTTCGCTGCGCTCATGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGC
GATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGT
TCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAAT
TCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTC
TCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACACACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGC
GCTACTTCCTAA
Protein sequenceShow/hide protein sequence
MSMTATEEENQCSMSTSTRPSAFQRLSVSTPKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEGYVGSLKKTLSSVSINKKR
FFAAVPSLQVRGSLHCTLLRCPSPSSKVLRCILLRCSFSKFEGSQLYNCYVVPPPSAKDLMWCVVALFPLLSSSMVLTQLCWSFFSPSSKVLTRSVAVPSFQGRRFSLAA
LKFFLPKFEGSRTSLFPFLQVRRFSRASPQFLPPSSKVHTRIATVPSSKFEGSHTHRHSSFLQVRILPPSSKVLTRIATVPSSKFEGSHAHRHSSFLQVRRFSRASPQFL
PPSSKVLTSFVAVPSSQFEGSHALRCSSFPQVRRFSRRFAALMRFAAVPSSKFEGSHIASLRSFLQVRRFSRASLCNSFPKFEGSHALRAVPSSKFEGSHALRCISFPPS
SKVLTCFAAFPSPQIRRFSRASLQFLPPKFEGSHALRCRSFLQVQRLPRRFAALMRFAAVPSSKFEGSHIASLRSFLQVRRFSRALLCNSFPKFEGSHALRAVPSSKFEG
SHALRCISFPPNSKVLTRFAAVPSSKFEGSHALRSAIPSPKFEGSHALRAVPSSKFEGSHALRCSSFPPNSKVLTRFAAVPSPKFEGSHTLRCSSFLQVQRFSRASLHSS
ATS