CuGenDBv2

Gene ID	Lag0022492
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr7:30636311..30639740
RNA-Seq Expression	Lag0022492
Synteny	Lag0022492
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032636.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.9e-16

91.49

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Query:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        S  N EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

KAA0042451.1 reverse transcriptase [Cucumis melo var. makuwa]

8.5e-16

93.33

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Query:  GNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        G  EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  GNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

KAA0057648.1 putative polyprotein [Cucumis melo var. makuwa]

2.9e-16

91.49

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Query:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        S  N EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

KAA0062085.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.1e-15

95.35

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Query:  KEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        +EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  KEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.9e-16

91.49

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Query:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        S  N EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRG3 Transposon Ty3-I Gag-Pol polyprotein

1.4e-16

91.49

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Query:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        S  N EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

A0A5A7TLJ3 Reverse transcriptase

4.1e-16

93.33

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Query:  GNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        G  EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  GNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

A0A5A7UR86 Putative polyprotein

1.4e-16

91.49

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Query:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        S  N EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

A0A5D3DGA7 Transposon Ty3-I Gag-Pol polyprotein

1.4e-16

91.49

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Query:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        S  N EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  STGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

A0A5D3DRJ1 F15O4.13

5.4e-16

95.35

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Query:  KEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD
        +EFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRT+
Subjt:  KEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGATLPNMAAYRTD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTGGTGTTCAATGAAGAGATCGTTGTCGAATCATTCGTGGTTTTGGAGCATAGTGCTGTGAAGAACGGTCTTCAACAAACTACCACATTGTTCTTGGCCATGTATTC
TTTTTGGCTTGCCATGAAATATTTCATCATTGTCTCCAGTGAATTTGAAGATGATGTGCCTTGGTTGCTACCACTGGCGTTGATGATTCTGCATCCTACTGCGTTGAGTT
GTGCGATTAAGAGTGTTGTGCTTGTTGTCACCGCATCCATCTTTGTGGTCAATGCATCAATTTTTGCGTTTACTAAAGTCATGGGTCAACTTCAAAACTTCCTGAACTGG
TTTCCACTGGTCTTCTTCGTTTGTCTTCTACAGTGCCCCACTCATAATTGTTGCGCGCAATGCGATCAAGGATTGTGTGCGCTTCATCATAGGATTAAAGTTGCATTTTG
CAGGGGCTGCATAATCTTTGATTCCTCTGGCTCTGTCATCAGCCATCTGGTAAATCTCAGTATTGATCTGGCGAGCAGCACACATATAATCTTGCTTGCCTGGAGAAAAT
ACTCAACAGGAAACAAGGAATTTAATGACATGTTTCCACATGAAGATGCACCTACGGGGTTACCTCCTCTAAGAGGGATTGAACATCAAATTGACTTCATTCCGGGTGCA
ACTCTTCCAAACATGGCTGCCTATAGGACTGATCGGTTGTTAGTATGCCAATAA

mRNA sequence

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Protein sequence

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MVVFNEEIVVESFVVLEHSAVKNGLQQTTTLFLAMYSFWLAMKYFIIVSSEFEDDVPWLLPLALMILHPTALSCAIKSVVLVVTASIFVVNASIFAFTKVMGQLQNFLNW
FPLVFFVCLLQCPTHNCCAQCDQGLCALHHRIKVAFCRGCIIFDSSGSVISHLVNLSIDLASSTHIILLAWRKYSTGNKEFNDMFPHEDAPTGLPPLRGIEHQIDFIPGA
TLPNMAAYRTDRLLVCQ

Lag0022492 (gene) of Sponge gourd (AG-4) v1 genome