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Lag0022504 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022504
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:31060332..31061162
RNA-Seq ExpressionLag0022504
SyntenyLag0022504
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR35143.1 hypothetical protein CICLE_v10007098mg, partial [Citrus clementina]1.5e-0541.03Show/hide
Query:  RNTYKVNIDVSVK--DGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSLPV
        +N +K+N D ++   DG+   GV+I+N   E M A+     F G IE+A+A AI EG++LA+  G+ P+ VE+DS+ V
Subjt:  RNTYKVNIDVSVK--DGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSLPV

GAY60770.1 hypothetical protein CUMW_204620 [Citrus unshiu]6.0e-0734.83Show/hide
Query:  NILEQKERWLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL
        ++  ++ERW  P++N +K+N D ++   +G+   GV+I+N  EE    +    PF G IE  +A A+ EG+EL    G+ P+ +E+DS+
Subjt:  NILEQKERWLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.5e-0534.34Show/hide
Query:  NPKATDFTSTRNILEQKERWLTPERNTYKVNIDVS--VKDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS
        NP     T+T  +L     WL P++  YK+N D S    D     G+II+N+  +VM +       + S++MA+A+   EG++LA   G++P+ +ETDS
Subjt:  NPKATDFTSTRNILEQKERWLTPERNTYKVNIDVS--VKDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS

XP_024037110.1 uncharacterized protein LOC112097050 [Citrus clementina]1.9e-0540Show/hide
Query:  WLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS
        W  P+   YK+N D ++  + GV   G II+N    VM A  S  P+ G +E+A+ALAI EG++LA    + P  +E+DS
Subjt:  WLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS

XP_024039172.1 uncharacterized protein LOC112097823 [Citrus clementina]1.9e-0538.27Show/hide
Query:  WLTPERNTYKVNIDVS--VKDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL
        W  P+   +K+N DV+  V++G    G +I+N +  VM+A    G +   + +A+A AIR G+ LAK TG+ P+ +E+DSL
Subjt:  WLTPERNTYKVNIDVS--VKDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)9.4e-0640Show/hide
Query:  WLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS
        W  P+   YK+N D ++  + GV   G II+N    VM A  S  P+ G +E+A+ALAI EG++LA    + P  +E+DS
Subjt:  WLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS

A0A2H5Q805 RNase H domain-containing protein2.9e-0734.83Show/hide
Query:  NILEQKERWLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL
        ++  ++ERW  P++N +K+N D ++   +G+   GV+I+N  EE    +    PF G IE  +A A+ EG+EL    G+ P+ +E+DS+
Subjt:  NILEQKERWLTPERNTYKVNIDVSV--KDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL

A0A6J1CIF1 uncharacterized protein LOC1110112377.2e-0634.34Show/hide
Query:  NPKATDFTSTRNILEQKERWLTPERNTYKVNIDVS--VKDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS
        NP     T+T  +L     WL P++  YK+N D S    D     G+II+N+  +VM +       + S++MA+A+   EG++LA   G++P+ +ETDS
Subjt:  NPKATDFTSTRNILEQKERWLTPERNTYKVNIDVS--VKDGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDS

V4RLS8 RNase H domain-containing protein (Fragment)7.2e-0641.03Show/hide
Query:  RNTYKVNIDVSVK--DGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSLPV
        +N +K+N D ++   DG+   GV+I+N   E M A+     F G IE+A+A AI EG++LA+  G+ P+ VE+DS+ V
Subjt:  RNTYKVNIDVSVK--DGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSLPV

V4SNF9 RNase H domain-containing protein1.2e-0532.58Show/hide
Query:  NILEQKERWLTPERNTYKVNIDVSVK--DGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL
        ++  ++ERW +P++N +K+N D ++   +G+    V+I+N   E   ++    PF G+ E  KA  I EG+EL    G+ P+ +E DS+
Subjt:  NILEQKERWLTPERNTYKVNIDVSVK--DGVHDRGVIIQNEDEEVMVATQSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCGATCGAAAAAAAAACGCGTGAGTTGATGGCTGACGCTGCTGCAGACAACATTAATGAGCTACCTGCAGCAGCCCTTGGGAAGACCATGACCGATGCAACAAG
CATAAAGGAGAATCAAGTAAGAAATACCGTAGATCAGAATAGAGGGAATCCAAAAGCAACAGACTTCACCAGCACAAGAAATATTCTAGAACAGAAGGAAAGGTGGTTGA
CGCCGGAAAGGAATACTTACAAGGTTAATATCGATGTTTCTGTCAAAGATGGAGTGCACGACAGAGGAGTTATTATTCAGAACGAAGACGAAGAAGTGATGGTAGCAACT
CAGTCCGTGGGTCCATTTCTGGGATCAATAGAAATGGCCAAAGCTCTAGCCATCCGTGAAGGGGTTGAACTAGCAAAATCAACGGGAATCCATCCAATTTGGGTGGAAAC
CGATTCGCTCCCAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCGATCGAAAAAAAAACGCGTGAGTTGATGGCTGACGCTGCTGCAGACAACATTAATGAGCTACCTGCAGCAGCCCTTGGGAAGACCATGACCGATGCAACAAG
CATAAAGGAGAATCAAGTAAGAAATACCGTAGATCAGAATAGAGGGAATCCAAAAGCAACAGACTTCACCAGCACAAGAAATATTCTAGAACAGAAGGAAAGGTGGTTGA
CGCCGGAAAGGAATACTTACAAGGTTAATATCGATGTTTCTGTCAAAGATGGAGTGCACGACAGAGGAGTTATTATTCAGAACGAAGACGAAGAAGTGATGGTAGCAACT
CAGTCCGTGGGTCCATTTCTGGGATCAATAGAAATGGCCAAAGCTCTAGCCATCCGTGAAGGGGTTGAACTAGCAAAATCAACGGGAATCCATCCAATTTGGGTGGAAAC
CGATTCGCTCCCAGTGTGA
Protein sequenceShow/hide protein sequence
MEPIEKKTRELMADAAADNINELPAAALGKTMTDATSIKENQVRNTVDQNRGNPKATDFTSTRNILEQKERWLTPERNTYKVNIDVSVKDGVHDRGVIIQNEDEEVMVAT
QSVGPFLGSIEMAKALAIREGVELAKSTGIHPIWVETDSLPV