; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022517 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022517
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr7:31523895..31526209
RNA-Seq ExpressionLag0022517
SyntenyLag0022517
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-1158.11Show/hide
Query:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEAN
        T +F +    TSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTE +
Subjt:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEAN

KAA0045115.1 hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa]4.1e-1149.02Show/hide
Query:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEA-------------NGSSSS
        M +V+   T +F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTE               GSSSS
Subjt:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEA-------------NGSSSS

Query:  KS
         S
Subjt:  KS

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]8.0e-1558.33Show/hide
Query:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGS
        M +++LH  FSF K K  TSKK+R STS FDRLK+T DQ +R+M +L++K F E N D+K+HS +PSRMKRK SV INTE   S
Subjt:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGS

KAA0065418.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1158.44Show/hide
Query:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGSS
        T +F +    TSKK R STSVFDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTE+  S+
Subjt:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGSS

TYK23623.1 hypothetical protein E5676_scaffold500G001390 [Cucumis melo var. makuwa]6.4e-1255.56Show/hide
Query:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEA
        M +V+   T +F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEA
Subjt:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEA

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein2.0e-1158.11Show/hide
Query:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEAN
        T +F +    TSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTE +
Subjt:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEAN

A0A5A7UC34 Uncharacterized protein3.9e-1558.33Show/hide
Query:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGS
        M +++LH  FSF K K  TSKK+R STS FDRLK+T DQ +R+M +L++K F E N D+K+HS +PSRMKRK SV INTE   S
Subjt:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGS

A0A5A7VCR0 Retrotransposon gag protein9.0e-1258.44Show/hide
Query:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGSS
        T +F +    TSKK R STSVFDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTE+  S+
Subjt:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGSS

A0A5D3BBF9 Gag protease polyprotein2.0e-1158.11Show/hide
Query:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEAN
        T +F +    TSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTE +
Subjt:  TFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEAN

A0A5D3DJ49 Uncharacterized protein3.1e-1255.56Show/hide
Query:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEA
        M +V+   T +F +     SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS +PSRMKRK SV INTEA
Subjt:  MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAA
CGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAATAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACAGAAGCGAATGGAAGTTCTTCCTCCAAGTCGAAGGCTCCCGTCGAGTCGAAGTCACACGTTGCTTGTTGCAGTTCCTTCTCTCCAAGTTCGAAG
GTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCA
GTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCT
TCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTT
TCATGCGTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCACGCATTTCGCTACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCT
TCCTCCAAGTCTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCA
CGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGTTCGAAGGTTCTTACGTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTT
CCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCATTCCCCCTAAGTTCGAAAGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGTTCC
TTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAATTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACTTCCTCCAAGTTCGAAGGTTCTCTC
ACGCGCTGCTGCAACTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCACTTCGCTCGCTCCTTCTCCAAGTTTGAAGGCGCTTCTCTCCGTTGCTACATTCCTCCAAGTT
CGAAGGTTCTCTCACGCGTTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCC
TTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTTGAAGGCGTTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTT
CTCCAAGTTTGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTACGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCT
CCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTTTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTT
CAAATGTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGACGTCCACCTTCACTCGACCTTCAGCTTTTCAAAGGCTAAGTGTCTCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAA
CGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAATAGTGACGAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTT
CTGTTCTCATAAATACAGAAGCGAATGGAAGTTCTTCCTCCAAGTCGAAGGCTCCCGTCGAGTCGAAGTCACACGTTGCTTGTTGCAGTTCCTTCTCTCCAAGTTCGAAG
GTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCA
GTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCT
TCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTT
TCATGCGTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCACGCATTTCGCTACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCT
TCCTCCAAGTCTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCA
CGCGCTTCGCTACAGTTCCTTCCTCACAGTTCGAAGTTCGAAGGTTCTTACGTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTT
CCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCATTCCCCCTAAGTTCGAAAGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGTTCC
TTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAATTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACTTCCTCCAAGTTCGAAGGTTCTCTC
ACGCGCTGCTGCAACTCCTTCCTCCAAGTTCGAAGGTTCTCTCACGCACTTCGCTCGCTCCTTCTCCAAGTTTGAAGGCGCTTCTCTCCGTTGCTACATTCCTCCAAGTT
CGAAGGTTCTCTCACGCGTTGCTGCAGTTCCTTCCTCCAAGTACGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCC
TTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTTGAAGGCGTTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTT
CTCCAAGTTTGAAGGCGCTTCTCTCCGCTACTCCTTCTCCAAGTTCGAAGGCGCTTCTCTACGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCT
CCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTTTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTT
CAAATGTTGGTAG
Protein sequenceShow/hide protein sequence
MFDVHLHSTFSFSKAKCLTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDEKLHSSIPSRMKRKFSVLINTEANGSSSSKSKAPVESKSHVACCSSFSPSSK
VLTSLRCSSFLTVRRFSRASLQFLPPKFEGSHVASLQFLPPSLKVLTSLRFALRFVAVPSSKFEGSHTLRCSFFSLTSKVLTRFAAIPSSLSLKVLTLLRCSSFLQVRRF
SCVCCSSFSPRSKVLTHFATVHFLQVQRFSRASVKFLPPSLKVLTCFGEVPSSQVRRFLRASLQFLPPSSKVLTRFATVPSSQFEVRRFLRASLQFLPPSSKVLTRFGEV
PSSKSEGSHALRCSSFPLSSKVLTRFAAVPSSQFEVPSSKFEGSHALRCTIPSSKFEGSHALRCYFLQVRRFSHALLQLLPPSSKVLSRTSLAPSPSLKALLSVATFLQV
RRFSHALLQFLPPSTKVPSRASLAPSPSSKALLSTAPSPSSKALLSVATSPSLKAFLSTAPSPSSKALLSTTPSPSLKALLSATPSPSSKALLYAAPSPSSKALLSAAPS
PSSKALLSTAPFPSSKVHRCSFSNVWRRLTSSFRFIFKCW