CuGenDBv2

Gene ID	Lag0022532
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr7:31905890..31907712
RNA-Seq Expression	Lag0022532
Synteny	Lag0022532
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031722.1 uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]

2.3e-54

62.03

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Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+   GK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI  KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RLNLT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]

3.9e-54

61.5

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Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+   GK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]

3.0e-54

62.03

Show/hide

Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+  LGK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK  ++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

KAA0050674.1 uncharacterized protein E6C27_scaffold673G001570 [Cucumis melo var. makuwa]

3.9e-54

61.5

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Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+   GK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA+AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]

7.8e-55

62.03

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Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+  LGK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKW3 Retrotrans_gag domain-containing protein

1.1e-54

62.03

Show/hide

Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+   GK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI  KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RLNLT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

A0A5A7T3M3 Reverse transcriptase

1.4e-54

62.03

Show/hide

Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+  LGK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK  ++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

A0A5D3BRZ6 Reverse transcriptase

1.9e-54

61.5

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Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+   GK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

A0A5D3BYE6 Reverse transcriptase

3.8e-55

62.03

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Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+  LGK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

A0A5D3C4R1 Reverse transcriptase

1.9e-54

61.5

Show/hide

Query:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV
        MSS+   GK   +RLVE+EEQ+LYL EVPDS+R+LESRLEEI+ KT+ IDAV+GRV+G PIQEL+ RV+ LE      R  ++E GD+STGSVA +EERV
Subjt:  MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKAT--RPSSFEHGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE
          LDSSQK +++M+  +SED + TLDVVR E+AD+  RL+LT+RA+ NQA AGGA+  ++VK+PEPKP C  RDAKALEN+IFDLE+
Subjt:  DGLDSSQKAIVQMVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCGTCGACAAAGCAATTGGGCAAAACCCATGTTGAACGACTTGTAGAAATCGAAGAGCAGCTGCTCTATTTGAGAGAAGTCCCAGATTCAGTTCGATTCTTGGAATC
TCGCTTGGAAGAGATTGCGACAAAGACGGACAAGATAGATGCGGTATCTGGCCGCGTGGATGGGATGCCCATCCAAGAATTGATAATGAGGGTTGAGAACCTCGAAGAAA
AAGCTACAAGACCTAGTAGCTTCGAGCATGGGGACAACTCGACGGGCTCTGTTGCCCAGATGGAGGAGCGTGTCGACGGCTTAGACAGCTCCCAAAAAGCAATAGTTCAA
ATGGTCACAGAATTGTCTGAAGATGTGAAAACGACCCTTGATGTCGTCAGAGCAGAAGTGGCAGATTTGAGGGTCAGACTAAACCTCACCATAAGAGCAGTGGGAAACCA
AGCCACGGCAGGGGGTGCGGTCCAGTTTAACAAAGTGAAGGTCCCTGAACCAAAACCCTTATGTAGGGTTCGAGACGCTAAAGCCCTGGAGAACTTTATCTTCGACCTGG
AAGAGATTCACTTCTTGGAAGAAATTGAGGACGTTTACCGCTACCATCAATATGTTTCCCAAGATCATGCCCTTCGATTCCGATTCTTATCCCTTTACTCTAATTCTGCT
CGTACCGCAGCCACCGTTGTCTCTGCCGTTGCTGGTACCCGCCGTTTTCTTAAGTTTCCGCCGTCGTCACCTGGTAGTCGCCGTCGCCTAGGTTTCAGCATCCAGAGAGC
AGCAGTGAGTGAGTGA

mRNA sequence

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Protein sequence

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MSSTKQLGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRVDGMPIQELIMRVENLEEKATRPSSFEHGDNSTGSVAQMEERVDGLDSSQKAIVQ
MVTELSEDVKTTLDVVRAEVADLRVRLNLTIRAVGNQATAGGAVQFNKVKVPEPKPLCRVRDAKALENFIFDLEEIHFLEEIEDVYRYHQYVSQDHALRFRFLSLYSNSA
RTAATVVSAVAGTRRFLKFPPSSPGSRRRLGFSIQRAAVSE

Lag0022532 (gene) of Sponge gourd (AG-4) v1 genome