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Lag0022567 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022567
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr7:33133591..33134086
RNA-Seq ExpressionLag0022567
SyntenyLag0022567
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6473655.1 hypothetical protein ZIOFF_067572 [Zingiber officinale]3.1e-1252.78Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRR
        C+CGLRA L  SWT+ NPGRRF  CP YK    GCGFF W DPE SE +K +IN L+    +LK     L++
Subjt:  CHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRR

KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]1.8e-1247.19Show/hide
Query:  RVDNSETKNP-CYCHCGLRARLITSWTKRNPGRRFHGCPSYKGN----GSGCGFFDWCDPEVSEHNKEVIN-------KLRDEVGRLKK
        R+++ +   P   CHCGLRA L TSWT+ NPGR F  CP Y+ +     +GCGFF W DPE+SE +K +IN       KL+ E+  LKK
Subjt:  RVDNSETKNP-CYCHCGLRARLITSWTKRNPGRRFHGCPSYKGN----GSGCGFFDWCDPEVSEHNKEVIN-------KLRDEVGRLKK

KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]7.0e-1237.5Show/hide
Query:  RVDNSETKNP-CYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVIN-------KLRDEVGRLKK---------------
        R+++ +   P   CHCGLRA L TSWT+ NPGRRF  CP Y+    GCGFF W DPE+SE +K +IN       KL+ E+  LKK               
Subjt:  RVDNSETKNP-CYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVIN-------KLRDEVGRLKK---------------

Query:  ----------IAHNLRRLEWLYRVIIVVLVGILVIV
                  ++  +  L   +RV I+V+V IL+++
Subjt:  ----------IAHNLRRLEWLYRVIIVVLVGILVIV

KAG6527582.1 hypothetical protein ZIOFF_009697 [Zingiber officinale]4.1e-1252.78Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRR
        C+CGLRA L TSWT+ NP RRF  CP Y+    GCGFF W DPEVSE +K +IN+L+    +LK   + L++
Subjt:  CHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRR

XP_042405651.1 uncharacterized protein LOC121995929 [Zingiber officinale]5.3e-1252.78Show/hide
Query:  CHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRR
        C+CGLRA L  SWT+ NPGRRF  CP YK    GCGFF W DPE SE +K +IN+L+    +LK     L++
Subjt:  CHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRR

TrEMBL top hitse value%identityAlignment
A0A2G9HUL6 DNA topoisomerase3.7e-1146.91Show/hide
Query:  SETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRRL
        S  +   YCHCG RA L TSWTK NPGRRFH C SYK    GC FF W DP +   +  +I  L  +  R +     LRR+
Subjt:  SETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRRL

A0A445HAE1 GRF-type domain-containing protein1.1e-1046.58Show/hide
Query:  SETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGS-GCGFFDWCDPEVSEHNKEVINKLRDEVGRLK
        S+ ++  +C C + A L+TSWT+ NPGRRF+GC  YK  G+ GC FF W DP  +   K++I  L  EV  LK
Subjt:  SETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGS-GCGFFDWCDPEVSEHNKEVINKLRDEVGRLK

A0A5B7ACY3 GRF-type domain-containing protein4.4e-1246.15Show/hide
Query:  YCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVI-------NKLRDEVGRLKKIAHNLRRLE---WLYRVI
        YCHCG RA + TSWT  NPGRRFHGC    G+ SGCGFF+W DP +    ++VI        +L  EV RL+     LR  E   W + V+
Subjt:  YCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVI-------NKLRDEVGRLKKIAHNLRRLE---WLYRVI

A0A6V7NYI1 GRF-type domain-containing protein3.4e-1248.86Show/hide
Query:  MDKFDGSSESVRVDNSETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKK
        M     SS           NP  C CGL+A   TS T  NPGRRF+GC +YK N  GCGFF W DPE+ E  KE I +L +++GRLKK
Subjt:  MDKFDGSSESVRVDNSETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKK

A0A6V7P503 GRF-type domain-containing protein2.2e-1151.22Show/hide
Query:  SSESVRVDNSETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKK
        SS    V      NP  C CGL+A   TS T  N GRRF+GC +YK N  GCGFF W DPE+ E  KE I +L +++GRLKK
Subjt:  SSESVRVDNSETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54930.1 GRF zinc finger / Zinc knuckle protein5.2e-0545.45Show/hide
Query:  CYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCD
        C C+ G     +TS T++NP RRF+ CPS       CG+F WCD
Subjt:  CYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCD

AT3G42860.1 zinc knuckle (CCHC-type) family protein8.5e-0858.14Show/hide
Query:  CHCGLRARLI-TSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCD
        C CG+   LI TS T +NPGR+F+ CP+ + NG GCGFF WCD
Subjt:  CHCGLRARLI-TSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGCAAAAGAAACTTTCGAAAATTGCAATGGACAAATTCGATGGAAGTTCAGAGTCCGTAAGAGTCGATAATAGTGAAACTAAGAACCCATGCTACTG
TCACTGTGGGTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCCATGGATGTCCTAGTTACAAGGGGAATGGTTCGGGATGTGGGTTTT
TTGATTGGTGTGATCCAGAAGTATCCGAACACAACAAAGAAGTGATTAACAAACTAAGAGATGAAGTTGGTCGGTTGAAGAAGATTGCACATAACTTGCGCCGTTTGGAG
TGGCTGTATCGTGTAATAATTGTAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGCAAAAGAAACTTTCGAAAATTGCAATGGACAAATTCGATGGAAGTTCAGAGTCCGTAAGAGTCGATAATAGTGAAACTAAGAACCCATGCTACTG
TCACTGTGGGTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCCATGGATGTCCTAGTTACAAGGGGAATGGTTCGGGATGTGGGTTTT
TTGATTGGTGTGATCCAGAAGTATCCGAACACAACAAAGAAGTGATTAACAAACTAAGAGATGAAGTTGGTCGGTTGAAGAAGATTGCACATAACTTGCGCCGTTTGGAG
TGGCTGTATCGTGTAATAATTGTAGTATTGGTGGGCATTTTAGTGATTGTATTTGGGTTTTGA
Protein sequenceShow/hide protein sequence
MSREMQKKLSKIAMDKFDGSSESVRVDNSETKNPCYCHCGLRARLITSWTKRNPGRRFHGCPSYKGNGSGCGFFDWCDPEVSEHNKEVINKLRDEVGRLKKIAHNLRRLE
WLYRVIIVVLVGILVIVFGF