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Lag0022596 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022596
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr7:34111233..34112734
RNA-Seq ExpressionLag0022596
SyntenyLag0022596
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.7e-2765.77Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+S+   +EENQC TST TR SAF+SLS+STSKK +PST  FDRLK+ +DQ +R+M +L+VK F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INTEG
Subjt:  RKFSVLINTEG

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.7e-2764.86Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+SM   +EENQC TST+ R SAF+ LS+STSKK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INTEG
Subjt:  RKFSVLINTEG

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-2663.96Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+SM   KEENQC TST+ R SAF+ LS+STSKK +PST  FDRLK+T+DQ +R+M  L+ K F E N D K+ S VPS MK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INT+G
Subjt:  RKFSVLINTEG

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-2664.86Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKPSTT  SVFQR+SM   +EENQC T  +TR S F+ LS+STSKK +PST VFDRLK+T DQ +R+M +L+ K F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INTEG
Subjt:  RKFSVLINTEG

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]2.8e-2663.06Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+SM   +EENQC TST+ R SAF+ LS+STSKK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK S+ INT+G
Subjt:  RKFSVLINTEG

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein2.7e-2765.77Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+S+   +EENQC TST TR SAF+SLS+STSKK +PST  FDRLK+ +DQ +R+M +L+VK F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INTEG
Subjt:  RKFSVLINTEG

A0A5A7TQ06 Retrotransposon gag protein2.7e-2764.86Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+SM   +EENQC TST+ R SAF+ LS+STSKK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INTEG
Subjt:  RKFSVLINTEG

A0A5A7U9V3 Retrotransposon gag protein1.4e-2663.96Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+SM   KEENQC TST+ R SAF+ LS+STSKK +PST  FDRLK+T+DQ +R+M  L+ K F E N D K+ S VPS MK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INT+G
Subjt:  RKFSVLINTEG

A0A5A7V7A0 Retrotransposon gag protein6.1e-2764.86Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKPSTT  SVFQR+SM   +EENQC T  +TR S F+ LS+STSKK +PST VFDRLK+T DQ +R+M +L+ K F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK SV INTEG
Subjt:  RKFSVLINTEG

A0A5D3D5Q0 Gag protease polyprotein1.4e-2663.06Show/hide
Query:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK
        TS FDRIKP TT  SVFQR+SM   +EENQC TST+ R SAF+ LS+STSKK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S VPSRMK
Subjt:  TSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMK

Query:  RKFSVLINTEG
        RK S+ INT+G
Subjt:  RKFSVLINTEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCCACCTTTGATCGCATCAAGCCTTCAACTACTTGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTT
CACTCGACCTTCAGCTTTCCGAAGCCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACACCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAA
AGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACACCGACAAAAAGCTCCAAAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACA
GAAGGTGAGCGCGCTTCGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTCTCATGCGCTTTGCTGCACTTCCTTCTCTCCAAATTCGAAGGTTCTCATGTGTTTTGCTGT
AGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCGGGTTCTTACGATGTACGCTACTTGTGTTGTTCCCTCTTCTTCAAGTTCGAAGGTGAACGCACTT
CGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTCTGACGCTGCTTCTGCTTCCTCACGTTGCTTCGCTGCAGTTCCTTGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACG
TTGCTTCGTGTTATTCCTTCTCTAAGTTCGAAGGTTCTCACGCTAAGTTTGTTCGAAGGTGCTTCCTCTTATACTGCATTGCATCACTGTTCCTTCAACAAGTTCGAAGG
TTCTTACGTTGTAGCAGGAAAGGAGCCCAAGTGGGAAGGACATCATGTGTCCTTGGGCCGAGAGACGTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCCACCTTTGATCGCATCAAGCCTTCAACTACTTGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTT
CACTCGACCTTCAGCTTTCCGAAGCCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACACCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAA
AGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACACCGACAAAAAGCTCCAAAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACA
GAAGGTGAGCGCGCTTCGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTCTCATGCGCTTTGCTGCACTTCCTTCTCTCCAAATTCGAAGGTTCTCATGTGTTTTGCTGT
AGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCGGGTTCTTACGATGTACGCTACTTGTGTTGTTCCCTCTTCTTCAAGTTCGAAGGTGAACGCACTT
CGCTGGAGTTCCTTCTCTCCAAATTCGAAGGTTCTGACGCTGCTTCTGCTTCCTCACGTTGCTTCGCTGCAGTTCCTTGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACG
TTGCTTCGTGTTATTCCTTCTCTAAGTTCGAAGGTTCTCACGCTAAGTTTGTTCGAAGGTGCTTCCTCTTATACTGCATTGCATCACTGTTCCTTCAACAAGTTCGAAGG
TTCTTACGTTGTAGCAGGAAAGGAGCCCAAGTGGGAAGGACATCATGTGTCCTTGGGCCGAGAGACGTCGTAG
Protein sequenceShow/hide protein sequence
MTSTFDRIKPSTTCPSVFQRMSMVATKEENQCSTSTFTRPSAFRSLSVSTSKKSQPSTPVFDRLKVTSDQPKRKMDNLEVKLFDEVNTDKKLQSSVPSRMKRKFSVLINT
EGERASLEFLLSKFEGSHALCCTSFSPNSKVLMCFAVVPSLQVRRFSRCFVAGSYDVRYLCCSLFFKFEGERTSLEFLLSKFEGSDAASASSRCFAAVPCSFSPSLKVLT
LLRVIPSLSSKVLTLSLFEGASSYTALHHCSFNKFEGSYVVAGKEPKWEGHHVSLGRETS