CuGenDBv2

Gene ID	Lag0022638
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	NUC173 domain-containing protein
Genome location	chr7:34793263..34803745
RNA-Seq Expression	Lag0022638
Synteny	Lag0022638
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR011989 - Armadillo-like helical IPR016024 - Armadillo-type fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053835.1 RRP12-like protein [Cucumis melo var. makuwa]

1.3e-121

67.28

Show/hide

Query:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR
        G L   +  ++ + + I  EHAWFASSRF ELVDML+                C  +L+++  +V+SAEE+NKAFLMLNEII+ALKS  + + K  + I 
Subjt:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR

Query:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII
            C  +    +N       +A ILGYLSGASPHVKSGAISALSVLVY+DADICLSIPDLVPSLLSLLRGKAIEVIKA LGFVKVLVSSLQAKHLQ+I 
Subjt:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII

Query:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH
        SDIL AALPWSSVSRH FRSKVT+ILEILIRKCGY+AIE  +PD YKGFIK L EKRHN+TS KD GDA TDVAD STN ARDKQ D LDSLPKK+ SGH
Subjt:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH

Query:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG
        HRKRKWEK S F  SKTD+T  EDGGR KM+KRAATS++K  SM+DG G G R  FSRRG PRK GKRGI+HGNRHQKER+G
Subjt:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG

TYK25566.1 RRP12-like protein [Cucumis melo var. makuwa]

2.2e-121

69.97

Show/hide

Query:  EHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIRDPDPCPTQ---ISNPYTCT
        EHAWFASSRF ELVDML+                C  +L+++  +V+SAEE+NKAFLMLNEII+ALKS  + + K  + I     C  +    +N     
Subjt:  EHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIRDPDPCPTQ---ISNPYTCT

Query:  LLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRFR
          +A ILGYLSGASPHVKSGAISALSVLVY+DADICLSIPDLVPSLLSLLRGKAIEVIKA LGFVKVLVSSLQAKHLQ+I SDIL AALPWSSVSRH FR
Subjt:  LLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRFR

Query:  SKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSKTDD
        SKVT+ILEILIRKCGY+AIE  +PD YKGFIK L EKRHN+TS KD GDA TDVAD STN ARDKQ D LDSLPKK+ SGHHRKRKWEK S F  SKTD+
Subjt:  SKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSKTDD

Query:  TFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG
        T  EDGGR KM+KRAATS++K  SM+DG G G R  FSRRG PRK GKRGI+HGNRHQKER+G
Subjt:  TFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG

XP_004136785.1 RRP12-like protein [Cucumis sativus]

1.3e-121

66.84

Show/hide

Query:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLI---------------CNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR
        G L   +  ++ + + I  EHAWFASSRF ELVDML+                C  +L++H  +V+SAEE+NKAFLMLNEII+ LKS  + + K  + I 
Subjt:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLI---------------CNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR

Query:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII
            C  +    +N       +A I+GYLSGASPHVKSGAISA+SVL+YEDADICLSIPDLVPS+LSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQ+II
Subjt:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII

Query:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH
        SDIL AALPWSSVSRH FRSKVT+ILEILIRKCGY+AIE  +P+ YKGFIK   EKR N+TSSKD GDA TDVAD STNG RDKQ D LDSLPKKN SGH
Subjt:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH

Query:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV
        HRKRKWEK S F  SKTD+   EDG R KM+KRAATSS+KR SM+DG G GRR  FSRRG PRK GK GI+HGNRHQKER+GV
Subjt:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV

XP_008443313.1 PREDICTED: RRP12-like protein [Cucumis melo]

3.4e-122

67.36

Show/hide

Query:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR
        G L   +  ++ + + I  EHAWFASSRF ELVDML+                C  +L+++  +V+SAEE+NKAFLMLNEII+ALKS  + + K  + I 
Subjt:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR

Query:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII
            C  +    +N       +A ILGYLSGASPHVKSGAISALSVLVY+DADICLSIPDLVPSLLSLLRGKAIEVIKA LGFVKVLVSSLQAKHLQ+I 
Subjt:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII

Query:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH
        SDIL AALPWSSVSRH FRSKVT+ILEILIRKCGY+AIE  +PD YKGFIK L EKRHN+TS KD GDA TDVAD STN ARDKQ D LDSLPKK+ SGH
Subjt:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH

Query:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV
        HRKRKWEK S F  SKTD+T  EDGGR KM+KRAATS++K  SM+DG G G R  FSRRG PRK GKRGI+HGNRHQKER+GV
Subjt:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV

XP_038905709.1 RRP12-like protein [Benincasa hispida]

3.3e-125

67.59

Show/hide

Query:  YKTVLKILRKSTGVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-
        YK V    + S G+   ++  ++ + + I  EHAW ASSRF +LVDML+                C  +L++H  +V+S EE+NKAFLMLNEIIVALKS 
Subjt:  YKTVLKILRKSTGVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-

Query:  RKAAGKEPFLIRDPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLV
         + + K  + I     C  +    +N       +A ILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLV
Subjt:  RKAAGKEPFLIRDPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLV

Query:  SSLQAKHLQNIISDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDE
        SSLQAK LQ+IISDIL A LPWSSVSRH FRSKVT+ILEILIRKCGY+AIE VSP+KYK FIK L EKRHN+T+SKDAGDA  DVADSSTNGA DKQ D 
Subjt:  SSLQAKHLQNIISDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDE

Query:  LDSLPKKNVSGHHRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV
        LDS  KK+ SGHHRKRKWEK S   GSKTDDTFTEDGGRSKM+KR ATS+NKR  M+DGLG GRR  FSRRG+PRK GKRGIEHGN+HQKER+GV
Subjt:  LDSLPKKNVSGHHRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHL3 NUC173 domain-containing protein

6.2e-122

66.84

Show/hide

Query:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLI---------------CNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR
        G L   +  ++ + + I  EHAWFASSRF ELVDML+                C  +L++H  +V+SAEE+NKAFLMLNEII+ LKS  + + K  + I 
Subjt:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLI---------------CNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR

Query:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII
            C  +    +N       +A I+GYLSGASPHVKSGAISA+SVL+YEDADICLSIPDLVPS+LSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQ+II
Subjt:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII

Query:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH
        SDIL AALPWSSVSRH FRSKVT+ILEILIRKCGY+AIE  +P+ YKGFIK   EKR N+TSSKD GDA TDVAD STNG RDKQ D LDSLPKKN SGH
Subjt:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH

Query:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV
        HRKRKWEK S F  SKTD+   EDG R KM+KRAATSS+KR SM+DG G GRR  FSRRG PRK GK GI+HGNRHQKER+GV
Subjt:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV

A0A1S3B7P4 RRP12-like protein

1.6e-122

67.36

Show/hide

Query:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR
        G L   +  ++ + + I  EHAWFASSRF ELVDML+                C  +L+++  +V+SAEE+NKAFLMLNEII+ALKS  + + K  + I 
Subjt:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR

Query:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII
            C  +    +N       +A ILGYLSGASPHVKSGAISALSVLVY+DADICLSIPDLVPSLLSLLRGKAIEVIKA LGFVKVLVSSLQAKHLQ+I 
Subjt:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII

Query:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH
        SDIL AALPWSSVSRH FRSKVT+ILEILIRKCGY+AIE  +PD YKGFIK L EKRHN+TS KD GDA TDVAD STN ARDKQ D LDSLPKK+ SGH
Subjt:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH

Query:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV
        HRKRKWEK S F  SKTD+T  EDGGR KM+KRAATS++K  SM+DG G G R  FSRRG PRK GKRGI+HGNRHQKER+GV
Subjt:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGV

A0A5A7UJH3 RRP12-like protein

6.2e-122

67.28

Show/hide

Query:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR
        G L   +  ++ + + I  EHAWFASSRF ELVDML+                C  +L+++  +V+SAEE+NKAFLMLNEII+ALKS  + + K  + I 
Subjt:  GVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIR

Query:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII
            C  +    +N       +A ILGYLSGASPHVKSGAISALSVLVY+DADICLSIPDLVPSLLSLLRGKAIEVIKA LGFVKVLVSSLQAKHLQ+I 
Subjt:  DPDPCPTQ---ISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNII

Query:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH
        SDIL AALPWSSVSRH FRSKVT+ILEILIRKCGY+AIE  +PD YKGFIK L EKRHN+TS KD GDA TDVAD STN ARDKQ D LDSLPKK+ SGH
Subjt:  SDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH

Query:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG
        HRKRKWEK S F  SKTD+T  EDGGR KM+KRAATS++K  SM+DG G G R  FSRRG PRK GKRGI+HGNRHQKER+G
Subjt:  HRKRKWEKSSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG

A0A5D3DPH3 RRP12-like protein

1.1e-121

69.97

Show/hide

Query:  EHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIRDPDPCPTQ---ISNPYTCT
        EHAWFASSRF ELVDML+                C  +L+++  +V+SAEE+NKAFLMLNEII+ALKS  + + K  + I     C  +    +N     
Subjt:  EHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-RKAAGKEPFLIRDPDPCPTQ---ISNPYTCT

Query:  LLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRFR
          +A ILGYLSGASPHVKSGAISALSVLVY+DADICLSIPDLVPSLLSLLRGKAIEVIKA LGFVKVLVSSLQAKHLQ+I SDIL AALPWSSVSRH FR
Subjt:  LLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRFR

Query:  SKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSKTDD
        SKVT+ILEILIRKCGY+AIE  +PD YKGFIK L EKRHN+TS KD GDA TDVAD STN ARDKQ D LDSLPKK+ SGHHRKRKWEK S F  SKTD+
Subjt:  SKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSKTDD

Query:  TFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG
        T  EDGGR KM+KRAATS++K  SM+DG G G R  FSRRG PRK GKRGI+HGNRHQKER+G
Subjt:  TFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG

A0A6J1FK07 RRP12-like protein

7.1e-118

68.85

Show/hide

Query:  EHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVN--SAEETNKAFLMLNEIIVALKS-----RKAAGKEPFLIRDPDPCPTQISNPY
        EHAWFASSRFSELV+ML+                C  +L++H  +VN  S EE+NKAFLMLNEIIVALKS     RKAA      I   +     ++N  
Subjt:  EHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVN--SAEETNKAFLMLNEIIVALKS-----RKAAGKEPFLIRDPDPCPTQISNPY

Query:  TCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRH
             +A ILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLL+GKAIEVIKAVLGFVKVLVSSLQAK LQ+I+SDILLAALPWSSVSRH
Subjt:  TCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRH

Query:  RFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSK
         FRSKVT+ILEIL+RKCGY+AIE VSPDKYKGFIK+L+EKRHN+TSSKDA DA TDVADS +NG RDKQHD L++ PKKNV+G +RKRKWEKSS F G K
Subjt:  RFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSK

Query:  TDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG
         D  FTEDG RSKM KRAA SS+KR S MDG G  RR +FSR  +PRK  +RG + G +HQKER+G
Subjt:  TDDTFTEDGGRSKMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYG

SwissProt top hits

e value

%identity

Alignment

Q12754 Ribosomal RNA-processing protein 12

2.8e-10

32.5

Show/hide

Query:  LSGASPHVKSGAISALSVLVYE-----DADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRFRSKVT
        L G S H+ S +I+  + LV+E     D+ I + I D +   L+     + E++K+ +GF KV V  L  + ++  + ++LL  L WS      F++KV 
Subjt:  LSGASPHVKSGAISALSVLVYE-----DADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRFRSKVT

Query:  IILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVAD-SSTNGAR
         I+E LIR+ GY  IEA  P++ +  +  +  K  N+   KD  + TT V+D ++T G+R
Subjt:  IILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVAD-SSTNGAR

Q9C0X8 Putative ribosomal RNA-processing protein 12

3.5e-05

26.46

Show/hide

Query:  GYKTVLKILRKSTGVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLICNLLLILHLKEVNSAEETNKAFLMLNEIIVAL-----KSRKAAGKEPFL
        GYK +  +LR   G   +AY T         L      SS    +V       L  +  L E+ S+E       +L E I++L     K+R  A +  F 
Subjt:  GYKTVLKILRKSTGVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLICNLLLILHLKEVNSAEETNKAFLMLNEIIVAL-----KSRKAAGKEPFL

Query:  IRDPDPCPTQISN--PYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSL---LRGKAIEVIKAVLGFVKVLVSSLQAKHL
        I        +  N  P      ++ I   L+G+S H+ S  I A+S +V E   + +S P LV  + +L   +     E+ KA + F+K+ VSS   + +
Subjt:  IRDPDPCPTQISN--PYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSL---LRGKAIEVIKAVLGFVKVLVSSLQAKHL

Query:  QNIISDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTL
        + ++ +++   L WS   +   R KV  + E + RK G + IE   P + K  I  +
Subjt:  QNIISDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTL

Arabidopsis top hits

e value

%identity

Alignment

AT2G34357.1 ARM repeat superfamily protein

1.6e-13

25.57

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Query:  YKTVLKILRKSTGVLDRAYDTIF--------FSSTVIRLEHAWFASSRFSELVDML----LICNLL--LILHLKEVNSAEETNKAFLMLNEIIVALKSRK
        YK +  IL+ S G + +  + +          S+   +L+  +F  +  S   D+     ++ + L  +IL LKEVN  +  N+A+ +L +I  A    +
Subjt:  YKTVLKILRKSTGVLDRAYDTIF--------FSSTVIRLEHAWFASSRFSELVDML----LICNLL--LILHLKEVNSAEETNKAFLMLNEIIVALKSRK

Query:  AAGKEPFLIRDPDPCPTQISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQA
          G    L    D                  ++G L+G  P + S A+  ++ L YE +D+  S  +L+PS   LL+ K  E+ KA LG +KVLV+    
Subjt:  AAGKEPFLIRDPDPCPTQISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQA

Query:  KHLQNIISDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLP
        + L   +  ++   L W   +++ F++KV ++LE+LI+KCG  A+++V P+++   +  + + +  +     AG   +D++ S        QH +  S  
Subjt:  KHLQNIISDILLAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLP

Query:  KKNVSGHHRKRKWEKSSDFHGSKTDDTFTEDGGRSK----MKKRAATSSNKR
         K    +  K   +  +D   S  DD   E  GRSK    +K +A+   +K+
Subjt:  KKNVSGHHRKRKWEKSSDFHGSKTDDTFTEDGGRSK----MKKRAATSSNKR

AT4G23540.1 ARM repeat superfamily protein

7.6e-56

40.52

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Query:  AYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-----RKAAGKEPFLIRD
        AYDT+   S V++ EH WF +S F+E+++MLL                C  +L+ H  + ++ EE  KAFL+LNE+I+ LK      RKAA     ++  
Subjt:  AYDTIFFSSTVIRLEHAWFASSRFSELVDMLL---------------ICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKS-----RKAAGKEPFLIRD

Query:  PDPCPTQISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDIL
             + I++   C  L+  I GY+SG SPH++SGA+SALS LVY+D +ICLS P+L+ S+LSLL  K+IE+IKAVLGFVKVLVS+ QA+ L +++ ++L
Subjt:  PDPCPTQISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDIL

Query:  LAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH---H
           LPWSSVSRH F+SKVTII+EI++RKCG  A++  +PDK+K FI+T+ E R  ++  K+  + +   +   + G R + + E  S       G+    
Subjt:  LAALPWSSVSRHRFRSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGH---H

Query:  RKRKWEK---SSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKR
        +KR +++   +SD + S+T       G RS  K+R A+ +N +
Subjt:  RKRKWEK---SSDFHGSKTDDTFTEDGGRSKMKKRAATSSNKR

Sequences

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CDS sequence

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ATGAAGAGTGGGAAATATGCCTTAGGATACAAAACCGTTCTCAAGATCCTGAGGAAATCTACAGGGGTCTTAGATAGGGCATATGACACTATCTTCTTCTCTTCAACAGT
AATTCGTTTGGAACATGCTTGGTTTGCTTCTTCTAGATTTTCTGAGCTGGTAGATATGTTATTGATCTGCAATCTCCTGTTGATACTTCATCTCAAAGAAGTTAACTCGG
CAGAGGAGACCAACAAGGCTTTTCTTATGCTCAATGAGATCATAGTTGCATTAAAAAGTAGGAAGGCAGCAGGAAAGGAGCCTTTCCTCATTAGGGATCCTGATCCCTGT
CCTACTCAAATCTCCAATCCTTATACTTGTACTCTTTTATTAGCCCCAATATTGGGCTATCTGTCTGGTGCATCTCCTCACGTAAAAAGTGGAGCAATCTCTGCACTCTC
AGTGCTGGTGTACGAAGACGCAGATATATGTCTTTCAATCCCTGATCTTGTGCCTTCCCTCTTATCTTTGCTACGAGGAAAAGCTATAGAAGTTATAAAAGCGGTGCTAG
GGTTTGTGAAAGTTCTAGTGTCTTCCTTGCAAGCTAAACATCTTCAGAACATCATTTCTGATATTCTTTTAGCGGCTCTACCTTGGTCGTCTGTCTCAAGGCATCGTTTT
AGATCGAAGGTAACAATAATTCTGGAGATTCTCATACGAAAATGTGGTTATTCTGCAATTGAGGCTGTTAGTCCTGACAAATACAAGGGTTTCATTAAGACTCTTTGGGA
GAAACGCCATAATCAGACCAGTTCCAAGGATGCTGGTGATGCTACTACAGATGTTGCAGATTCATCTACTAATGGGGCAAGGGATAAGCAACACGACGAACTGGATTCTC
TGCCGAAGAAAAATGTATCAGGTCATCACAGGAAAAGGAAGTGGGAAAAATCTTCTGATTTCCACGGGAGCAAAACTGATGATACATTCACTGAGGATGGTGGTAGATCT
AAGATGAAAAAAAGAGCTGCAACCTCTAGTAATAAGAGGATTTCAATGATGGATGGTTTAGGAGGCGGTCGTAGGGAAAATTTTTCGAGGCGTGGTTCTCCTAGAAAAGG
TGGAAAGAGAGGGATCGAACATGGAAACAGGCATCAGAAAGAAAGATATGGAGTTCTCACCTGGATATTACTCTGTTTCCAGGAAGCTATAATTTGGAAACAGAATGGAC
ATGCATATGAGCTAAGCAGATCGAATCTCAAATCTTCTTCAAATTTAGCTGCAGAACGGAAGAACGAAGCTCAGATCCTCTTCAAGTCCTGTTGCAGAACCAAAGATCGA
AGCTCAGATCCTCTTCAAATCTCGCTTCAGAACCGAAGAACGAAGCTCAGATCATCTTCAAATCCTGCTACAAAGCTGAAGAACGAAGCTCAGATCCTCTTCAAATCTTG
CTGTGAAACTGAAGATCGAAGCTCAAATCCTTTTCAAATCCTCCTGCAAAACCGAAGATCGAATCTCAAATCTTCTTCAAATTTAGCTGCAGAACGGAAGAACGAAGCTC
AGATCCTCTTCAAGTCCTGTTGCAGAACCAAAGATCGAAGCTCAGATCCTCTTCAAATCTCGCTTCAGAACCGAAGAACGAAGCTCAGATCATCTTCAAATCCTGCTACA
AAGCTGAAGAACGAAGCTCAGATCCTCTTCAAATCTTGCTGTGAAACTGAAGATCGAAGCTCAAATCCTTTTCAAATCCTCCTGCAAAACCGAAGGTTAAAGCTCAGAGC
CTCATGA

mRNA sequence

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Protein sequence

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MKSGKYALGYKTVLKILRKSTGVLDRAYDTIFFSSTVIRLEHAWFASSRFSELVDMLLICNLLLILHLKEVNSAEETNKAFLMLNEIIVALKSRKAAGKEPFLIRDPDPC
PTQISNPYTCTLLLAPILGYLSGASPHVKSGAISALSVLVYEDADICLSIPDLVPSLLSLLRGKAIEVIKAVLGFVKVLVSSLQAKHLQNIISDILLAALPWSSVSRHRF
RSKVTIILEILIRKCGYSAIEAVSPDKYKGFIKTLWEKRHNQTSSKDAGDATTDVADSSTNGARDKQHDELDSLPKKNVSGHHRKRKWEKSSDFHGSKTDDTFTEDGGRS
KMKKRAATSSNKRISMMDGLGGGRRENFSRRGSPRKGGKRGIEHGNRHQKERYGVLTWILLCFQEAIIWKQNGHAYELSRSNLKSSSNLAAERKNEAQILFKSCCRTKDR
SSDPLQISLQNRRTKLRSSSNPATKLKNEAQILFKSCCETEDRSSNPFQILLQNRRSNLKSSSNLAAERKNEAQILFKSCCRTKDRSSDPLQISLQNRRTKLRSSSNPAT
KLKNEAQILFKSCCETEDRSSNPFQILLQNRRLKLRAS

Lag0022638 (gene) of Sponge gourd (AG-4) v1 genome