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Lag0022646 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022646
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:34897740..34898454
RNA-Seq ExpressionLag0022646
SyntenyLag0022646
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3472112.1 reverse transcriptase [Gossypium australe]8.5e-0533.68Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPE
        E+ A +  +  A  +G R++ V  +SLT+IK I  E    S +  +I +IR+    F+ +SF F+ RK N  AH     G  +P P  W    PE
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPE

KAE8733199.1 hypothetical protein F3Y22_tig00001478pilonHSYRG00382 [Hibiscus syriacus]6.5e-0532.43Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL
        E +A    LRLA  +  RRL V  ++LT+I  IN  S   S +  +I +I+     F+ ++F  V RK N   H    VG ++ +PM+W    P  M   
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL

Query:  SLHERKVFVSP
        ++ + K++V P
Subjt:  SLHERKVFVSP

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]7.0e-0722.48Show/hide
Query:  MSDYPGQELECICVGAWAIWNDRNSWFHNRPIPDVANRSDWI--NAQDIRL--------------------------------------FGLFLSVG---
        M +    EL    +  WA+WNDR++  + + IP+   + +WI   A+++R+                                       G+ L  G   
Subjt:  MSDYPGQELECICVGAWAIWNDRNSWFHNRPIPDVANRSDWI--NAQDIRL--------------------------------------FGLFLSVG---

Query:  ----------------GETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSY
                         + +AI+EGL LA  +GV R+ V ++SL  + +I  +SP      + + DIR +   F  + F+ V R+ N  A+      +S 
Subjt:  ----------------GETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSY

Query:  PSPMLWYGNYPEWMVSLS
            LW  ++P W+  L+
Subjt:  PSPMLWYGNYPEWMVSLS

XP_027096164.1 uncharacterized protein LOC113716063 [Coffea arabica]2.6e-0629.73Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL
        E +AI+  L +A   G +++ V S+  ++++ IN+ S    ++AT++ D++  R  FD  SF F+SR  N  +H      +     + W  ++P W++ L
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL

Query:  SLHERKVFVSP
         + E +V VSP
Subjt:  SLHERKVFVSP

XP_027157225.1 uncharacterized protein LOC113758655 [Coffea eugenioides]1.5e-0426.42Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL
        E +A++  L +A   G +++ V S+  + ++ IN+ S    S+AT++ D++  R  F+  SF F+SR  N  +H      +     + W  ++P W++ L
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL

Query:  SLHERK
         + E +
Subjt:  SLHERK

TrEMBL top hitse value%identityAlignment
A0A2N9IYW9 Reverse transcriptase domain-containing protein5.4e-0529.9Show/hide
Query:  MAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVS
        M +   L+ AH++G+RRL V   +  L+ +I   +P  + +  +I DI  W +LF  ++F F+ +  N  AH      LS  S  +W  ++P  + S
Subjt:  MAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVS

A0A5B6VSY9 Reverse transcriptase4.1e-0533.68Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPE
        E+ A +  +  A  +G R++ V  +SLT+IK I  E    S +  +I +IR+    F+ +SF F+ RK N  AH     G  +P P  W    PE
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPE

A0A6A3D1Q4 RNase H domain-containing protein3.2e-0532.43Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL
        E +A    LRLA  +  RRL V  ++LT+I  IN  S   S +  +I +I+     F+ ++F  V RK N   H    VG ++ +PM+W    P  M   
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL

Query:  SLHERKVFVSP
        ++ + K++V P
Subjt:  SLHERKVFVSP

A0A6J1DZK3 uncharacterized protein LOC1110249683.4e-0722.48Show/hide
Query:  MSDYPGQELECICVGAWAIWNDRNSWFHNRPIPDVANRSDWI--NAQDIRL--------------------------------------FGLFLSVG---
        M +    EL    +  WA+WNDR++  + + IP+   + +WI   A+++R+                                       G+ L  G   
Subjt:  MSDYPGQELECICVGAWAIWNDRNSWFHNRPIPDVANRSDWI--NAQDIRL--------------------------------------FGLFLSVG---

Query:  ----------------GETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSY
                         + +AI+EGL LA  +GV R+ V ++SL  + +I  +SP      + + DIR +   F  + F+ V R+ N  A+      +S 
Subjt:  ----------------GETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSY

Query:  PSPMLWYGNYPEWMVSLS
            LW  ++P W+  L+
Subjt:  PSPMLWYGNYPEWMVSLS

A0A6P6UZA6 uncharacterized protein LOC1137160631.3e-0629.73Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL
        E +AI+  L +A   G +++ V S+  ++++ IN+ S    ++AT++ D++  R  FD  SF F+SR  N  +H      +     + W  ++P W++ L
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSL

Query:  SLHERKVFVSP
         + E +V VSP
Subjt:  SLHERKVFVSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0433.75Show/hide
Query:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVG
        ET A+   L+     G  R+ +  +  TL  +++  S  N  LA ++ DIR+W   F NV F FV R  N  AH+   +G
Subjt:  ETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRVWRYLFDNVSFKFVSRKFNTFAHKTVCVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGATTATCCGGGGCAGGAACTTGAATGTATCTGTGTGGGGGCTTGGGCCATTTGGAATGATCGAAATAGTTGGTTTCACAATCGTCCAATCCCCGATGTAGCAAA
TCGATCTGACTGGATAAATGCTCAAGACATCAGGTTATTCGGCTTGTTCCTCTCCGTTGGGGGGGAAACAATGGCGATCCAAGAAGGTCTTCGATTGGCCCATGCAGTGG
GTGTTCGTAGATTGACGGTTTTATCGAATTCGTTGACATTGATAAAGGTTATTAACAAGGAAAGTCCTGGCAATTCTAGCCTTGCCACCGTCATTTGGGATATTAGAGTC
TGGCGATATTTGTTCGACAATGTGAGTTTTAAATTTGTTAGCCGTAAGTTTAATACGTTTGCTCATAAAACAGTCTGTGTTGGCCTTTCTTATCCATCACCAATGTTGTG
GTATGGAAACTATCCAGAATGGATGGTTAGTTTGTCGCTCCACGAGCGTAAGGTGTTTGTATCCCCTCGGGGTTCTTTTGTTAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGATTATCCGGGGCAGGAACTTGAATGTATCTGTGTGGGGGCTTGGGCCATTTGGAATGATCGAAATAGTTGGTTTCACAATCGTCCAATCCCCGATGTAGCAAA
TCGATCTGACTGGATAAATGCTCAAGACATCAGGTTATTCGGCTTGTTCCTCTCCGTTGGGGGGGAAACAATGGCGATCCAAGAAGGTCTTCGATTGGCCCATGCAGTGG
GTGTTCGTAGATTGACGGTTTTATCGAATTCGTTGACATTGATAAAGGTTATTAACAAGGAAAGTCCTGGCAATTCTAGCCTTGCCACCGTCATTTGGGATATTAGAGTC
TGGCGATATTTGTTCGACAATGTGAGTTTTAAATTTGTTAGCCGTAAGTTTAATACGTTTGCTCATAAAACAGTCTGTGTTGGCCTTTCTTATCCATCACCAATGTTGTG
GTATGGAAACTATCCAGAATGGATGGTTAGTTTGTCGCTCCACGAGCGTAAGGTGTTTGTATCCCCTCGGGGTTCTTTTGTTAACTAA
Protein sequenceShow/hide protein sequence
MSDYPGQELECICVGAWAIWNDRNSWFHNRPIPDVANRSDWINAQDIRLFGLFLSVGGETMAIQEGLRLAHAVGVRRLTVLSNSLTLIKVINKESPGNSSLATVIWDIRV
WRYLFDNVSFKFVSRKFNTFAHKTVCVGLSYPSPMLWYGNYPEWMVSLSLHERKVFVSPRGSFVN