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Lag0022647 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022647
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr7:34951901..34952661
RNA-Seq ExpressionLag0022647
SyntenyLag0022647
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042123.1 gag/pol protein [Cucumis melo var. makuwa]5.2e-4955.12Show/hide
Query:  MILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCRMKDGTS
        MILV+ +LRF+L EECP  P+ NASQ+ +DAYD W KAN KA +YI AS+S+++SKK + MVTAR+IM+S +E+FG+ S Q   +A+KY+ N RMK+  S
Subjt:  MILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCRMKDGTS

Query:  VRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFH
        +R+HVL+M+V FNV+  N AV  E+SQSL   K   EGE NVAHS+R             P SS SKKIQK KG KGK P  T + KGK KV  K KCFH
Subjt:  VRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFH

Query:  YNVDG
         NVDG
Subjt:  YNVDG

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]9.9e-4846.4Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N +L++D+LRF+L EECP  P+ NA++  R+ Y++W KAN+KA  YI ASLSEV++KK+++M+TAREIM+S QEMFG+ SYQ  HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF
        M +G SVR+HVL+MMV FNV   N AVI E SQ                                       SL+K K   +GE NVA S RKF +GS+ 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF

Query:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG
        GTKS+P SS +KK +K KG +G           K   A K  CFH N +G
Subjt:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG

KAA0054432.1 gag/pol protein [Cucumis melo var. makuwa]3.4e-4846.4Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N +L++D+LRF+L EECP  P+ NA++  R+ Y++W KANKKA  YI ASLSEV++KK+++M+TAREIM+S QEMF + SYQ  HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF
        M +G SVR+HVL+MMV FNV+  N AVI E SQ                                       SL+K K   +GE NVA S RKF +GS+ 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF

Query:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG
        GTKS+P SS +KK +K K  +G           K   A K  CFHYN +G
Subjt:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG

KAA0060254.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-5252.61Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N++L++D+L+F+L EECP  P+ NA+Q  R+ Y++W K N+K   YI ASLSEV++KK+++M+TAREIM+S QEMFG+ SYQ +HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD
        M +G SVR+HVL+MMV FNV   N AVI E SQ         +GE NVA S RKF +GS+ GTKS+P SS +KK +K KG +G           K   A 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD

Query:  KDKCFHYNVDG
        K  CFHYN +G
Subjt:  KDKCFHYNVDG

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-5252.61Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N++L++D+L+F+L EECP  P+ NA+Q  R+ Y++W K N+K   YI ASLSEV++KK+++M+TAREIM+S QEMFG+ SYQ +HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD
        M +G SVR+HVL+MMV FNV   N AVI E SQ         +GE NVA S RKF +GS+ GTKS+P SS +KK +K KG +G           K   A 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD

Query:  KDKCFHYNVDG
        K  CFHYN +G
Subjt:  KDKCFHYNVDG

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein4.8e-4846.4Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N +L++D+LRF+L EECP  P+ NA++  R+ Y++W KAN+KA  YI ASLSEV++KK+++M+TAREIM+S QEMFG+ SYQ  HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF
        M +G SVR+HVL+MMV FNV   N AVI E SQ                                       SL+K K   +GE NVA S RKF +GS+ 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF

Query:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG
        GTKS+P SS +KK +K KG +G           K   A K  CFH N +G
Subjt:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG

A0A5A7TFX6 Gag/pol protein2.5e-4955.12Show/hide
Query:  MILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCRMKDGTS
        MILV+ +LRF+L EECP  P+ NASQ+ +DAYD W KAN KA +YI AS+S+++SKK + MVTAR+IM+S +E+FG+ S Q   +A+KY+ N RMK+  S
Subjt:  MILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCRMKDGTS

Query:  VRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFH
        +R+HVL+M+V FNV+  N AV  E+SQSL   K   EGE NVAHS+R             P SS SKKIQK KG KGK P  T + KGK KV  K KCFH
Subjt:  VRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFH

Query:  YNVDG
         NVDG
Subjt:  YNVDG

A0A5A7UF91 Gag/pol protein1.6e-4846.4Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N +L++D+LRF+L EECP  P+ NA++  R+ Y++W KANKKA  YI ASLSEV++KK+++M+TAREIM+S QEMF + SYQ  HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF
        M +G SVR+HVL+MMV FNV+  N AVI E SQ                                       SL+K K   +GE NVA S RKF +GS+ 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQ---------------------------------------SLIKSKRPIEGEENVAHSKRKFQKGSSF

Query:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG
        GTKS+P SS +KK +K K  +G           K   A K  CFHYN +G
Subjt:  GTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDG

A0A5A7UYX7 Gag/pol protein2.5e-5252.61Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N++L++D+L+F+L EECP  P+ NA+Q  R+ Y++W K N+K   YI ASLSEV++KK+++M+TAREIM+S QEMFG+ SYQ +HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD
        M +G SVR+HVL+MMV FNV   N AVI E SQ         +GE NVA S RKF +GS+ GTKS+P SS +KK +K KG +G           K   A 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD

Query:  KDKCFHYNVDG
        K  CFHYN +G
Subjt:  KDKCFHYNVDG

A0A5D3BHG7 Gag/pol protein2.5e-5252.61Show/hide
Query:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR
        WK+ +N++L++D+L+F+L EECP  P+ NA+Q  R+ Y++W K N+K   YI ASLSEV++KK+++M+TAREIM+S QEMFG+ SYQ +HDALKYI N R
Subjt:  WKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCR

Query:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD
        M +G SVR+HVL+MMV FNV   N AVI E SQ         +GE NVA S RKF +GS+ GTKS+P SS +KK +K KG +G           K   A 
Subjt:  MKDGTSVRKHVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVAD

Query:  KDKCFHYNVDG
        K  CFHYN +G
Subjt:  KDKCFHYNVDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGTCCAACTTGAATATGATTCTTGTTGTGGATGAGCTACGGTTCATCTTATCAGAGGAATGTCCTCTGGCCCCTTCTCATAATGCATCCCAAGCTACGAGAGA
TGCCTACGACCAGTGGATAAAGGCCAACAAAAAGGCTCACGTCTACATCTTTGCGAGCTTATCTGAAGTTATGTCCAAAAAGAATAAAGCCATGGTTACTGCGAGAGAGA
TTATGGAATCTTTCCAGGAGATGTTTGGACGACCGTCCTATCAACCCCACCATGACGCCCTTAAGTACATTTGCAACTGCCGCATGAAAGATGGCACATCTGTTCGGAAA
CATGTCCTGGACATGATGGTCCAATTTAATGTGATAGTGGCAAATGCAGCGGTCATATACGAGCGCAGTCAGTCTCTTATAAAAAGTAAGAGACCAATAGAAGGAGAGGA
AAATGTTGCCCATTCTAAAAGAAAGTTTCAGAAGGGTTCATCCTTTGGGACAAAATCTGTACCTCAATCTTCTGCTTCTAAGAAGATTCAGAAGAATAAGGGGGACAAGG
GGAAGGCTCCCGCCACTACTATACAATACAAGGGAAAGCCCAAGGTGGCTGACAAGGACAAGTGTTTCCACTACAACGTGGATGGGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGTCCAACTTGAATATGATTCTTGTTGTGGATGAGCTACGGTTCATCTTATCAGAGGAATGTCCTCTGGCCCCTTCTCATAATGCATCCCAAGCTACGAGAGA
TGCCTACGACCAGTGGATAAAGGCCAACAAAAAGGCTCACGTCTACATCTTTGCGAGCTTATCTGAAGTTATGTCCAAAAAGAATAAAGCCATGGTTACTGCGAGAGAGA
TTATGGAATCTTTCCAGGAGATGTTTGGACGACCGTCCTATCAACCCCACCATGACGCCCTTAAGTACATTTGCAACTGCCGCATGAAAGATGGCACATCTGTTCGGAAA
CATGTCCTGGACATGATGGTCCAATTTAATGTGATAGTGGCAAATGCAGCGGTCATATACGAGCGCAGTCAGTCTCTTATAAAAAGTAAGAGACCAATAGAAGGAGAGGA
AAATGTTGCCCATTCTAAAAGAAAGTTTCAGAAGGGTTCATCCTTTGGGACAAAATCTGTACCTCAATCTTCTGCTTCTAAGAAGATTCAGAAGAATAAGGGGGACAAGG
GGAAGGCTCCCGCCACTACTATACAATACAAGGGAAAGCCCAAGGTGGCTGACAAGGACAAGTGTTTCCACTACAACGTGGATGGGCAATAA
Protein sequenceShow/hide protein sequence
MWKSNLNMILVVDELRFILSEECPLAPSHNASQATRDAYDQWIKANKKAHVYIFASLSEVMSKKNKAMVTAREIMESFQEMFGRPSYQPHHDALKYICNCRMKDGTSVRK
HVLDMMVQFNVIVANAAVIYERSQSLIKSKRPIEGEENVAHSKRKFQKGSSFGTKSVPQSSASKKIQKNKGDKGKAPATTIQYKGKPKVADKDKCFHYNVDGQ