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Lag0022675 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022675
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:35403543..35404637
RNA-Seq ExpressionLag0022675
SyntenyLag0022675
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144467.1 uncharacterized protein LOC111014147 [Momordica charantia]1.6e-1934.16Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTEN-----------------QVENES-RSSRAQLEPGEQG
        K   ++K    +  +      H  H H T   + +K+E+E LI+ GYLKE+V   EE   T+N                  +E ES R  +A +     G
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTEN-----------------QVENES-RSSRAQLEPGEQG

Query:  SSLT-AANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG------------------------------
              ANVKVHR+L+DGGS AD+LS   Y AM LG   L+S   PLVGFGGE      + +   T  SG                              
Subjt:  SSLT-AANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG------------------------------

Query:  ----ASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR
             STYHQ +KFPT  GVG + GEQ++SRECY+ +++  DR
Subjt:  ----ASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]1.5e-1731.43Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVEN----------ESRSSRAQLEPGEQGS-------
        K   ++K  P +  +      H DH H T   + +K+E+E LIQ GYLKE+V   ++   T+N+ E           E + ++ +    E          
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVEN----------ESRSSRAQLEPGEQGS-------

Query:  ----SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------------------------------KDDQTCTAQSGAST-
            +L  AN KVH IL+DGGSS D++S+  Y  M LG   L+S   PLVGFGGE                                  +C A  G  T 
Subjt:  ----SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------------------------------KDDQTCTAQSGAST-

Query:  ---------YHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR
                 YHQ +KFPT  G+G + GEQ++SRECY+ ++K  D+
Subjt:  ---------YHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]4.6e-1932.17Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRS-----------SRAQLEPGEQGS------
        K   ++K  P +  +      H DH H T   + +K+E+E LI+ GYLKE+V    ED +     EN+S S             A+LE  E  +      
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRS-----------SRAQLEPGEQGS------

Query:  -------SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEK----------------------------------------D
               +L  AN KVHRIL+DGGSS  ++S+  Y AM LG   L+S   PLVGFGGE+                                         
Subjt:  -------SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEK----------------------------------------D

Query:  DQTCTAQSGASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQTVPTSGN
         +    +   STYHQ +KFPT  G+G + GEQ++ RECY  ++K  DR +    T GN
Subjt:  DQTCTAQSGASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQTVPTSGN

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]1.1e-1734.67Show/hide
Query:  HEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEED--------HRTENQVENE-----------SRSSRAQLEPGEQGS---SLTAANVKVHRILIDG
        H DHDH T   + +K+E+E LI+ GYLKE     ++         +R +N+V +            S     QL      +   +L  ANVKVHRIL+DG
Subjt:  HEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEED--------HRTENQVENE-----------SRSSRAQLEPGEQGS---SLTAANVKVHRILIDG

Query:  GSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG----------------------------------ASTYHQVLKFPTKE
        GSSAD++S   Y AM L    L+S   PLVGFGGE      + +   T  SG                                   STYHQ +KFPT  
Subjt:  GSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG----------------------------------ASTYHQVLKFPTKE

Query:  GVGVVHGEQKMSRECYFMALKHMDR
        GV  + GEQ++SRECY+ +++  DR
Subjt:  GVGVVHGEQKMSRECYFMALKHMDR

XP_030963320.1 uncharacterized protein LOC115984434 [Quercus lobata]1.0e-1832.75Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTTG-VYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRSSRAQLEPGEQGSSLTAANVKVHRILIDGG
        K   K+K  P +  +      H DH H T   + +K +IE LI++G L+ F+G   +D + + + E  SR    ++     GSS   ++    R+L+D G
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTTG-VYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRSSRAQLEPGEQGSSLTAANVKVHRILIDGG

Query:  SSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEKDDQT--------------------------CTAQSGA--------------STYHQVLKFPTKEG
        SSAD+L    +  MKLGRDRLR   +PLVGFGG K                              C++   A              STYH  +KFPT+ G
Subjt:  SSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEKDDQT--------------------------CTAQSGA--------------STYHQVLKFPTKEG

Query:  VGVVHGEQKMSRECYFMALKHMDRKAQTV
        VG V G+Q  +RECY +A+   D + QT+
Subjt:  VGVVHGEQKMSRECYFMALKHMDRKAQTV

TrEMBL top hitse value%identityAlignment
A0A6J1CTS4 uncharacterized protein LOC1110141477.6e-2034.16Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTEN-----------------QVENES-RSSRAQLEPGEQG
        K   ++K    +  +      H  H H T   + +K+E+E LI+ GYLKE+V   EE   T+N                  +E ES R  +A +     G
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTEN-----------------QVENES-RSSRAQLEPGEQG

Query:  SSLT-AANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG------------------------------
              ANVKVHR+L+DGGS AD+LS   Y AM LG   L+S   PLVGFGGE      + +   T  SG                              
Subjt:  SSLT-AANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG------------------------------

Query:  ----ASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR
             STYHQ +KFPT  GVG + GEQ++SRECY+ +++  DR
Subjt:  ----ASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR

A0A6J1DAK4 uncharacterized protein LOC1110189027.1e-1831.43Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVEN----------ESRSSRAQLEPGEQGS-------
        K   ++K  P +  +      H DH H T   + +K+E+E LIQ GYLKE+V   ++   T+N+ E           E + ++ +    E          
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVEN----------ESRSSRAQLEPGEQGS-------

Query:  ----SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------------------------------KDDQTCTAQSGAST-
            +L  AN KVH IL+DGGSS D++S+  Y  M LG   L+S   PLVGFGGE                                  +C A  G  T 
Subjt:  ----SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------------------------------KDDQTCTAQSGAST-

Query:  ---------YHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR
                 YHQ +KFPT  G+G + GEQ++SRECY+ ++K  D+
Subjt:  ---------YHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDR

A0A6J1DKR9 uncharacterized protein LOC1110214389.3e-1839.31Show/hide
Query:  SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEK------DDQTCTAQSG--------------------------------
        +L  AN KVHRIL+DGGSSAD +S+  Y AM LG++ L+S LTPL+GFGGE+       +   T +SG                                
Subjt:  SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEK------DDQTCTAQSG--------------------------------

Query:  --ASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQT
           STYHQ +KFPT  GVG + GEQ++ RECY+  +   D+ + T
Subjt:  --ASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQT

A0A6J1DP33 uncharacterized protein LOC1110228862.2e-1932.17Show/hide
Query:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRS-----------SRAQLEPGEQGS------
        K   ++K  P +  +      H DH H T   + +K+E+E LI+ GYLKE+V    ED +     EN+S S             A+LE  E  +      
Subjt:  KTSRKVKIRPRQEKQEHISHVHEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRS-----------SRAQLEPGEQGS------

Query:  -------SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEK----------------------------------------D
               +L  AN KVHRIL+DGGSS  ++S+  Y AM LG   L+S   PLVGFGGE+                                         
Subjt:  -------SLTAANVKVHRILIDGGSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEK----------------------------------------D

Query:  DQTCTAQSGASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQTVPTSGN
         +    +   STYHQ +KFPT  G+G + GEQ++ RECY  ++K  DR +    T GN
Subjt:  DQTCTAQSGASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQTVPTSGN

A0A6J1DRG9 uncharacterized protein LOC1110235875.4e-1834.67Show/hide
Query:  HEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEED--------HRTENQVENE-----------SRSSRAQLEPGEQGS---SLTAANVKVHRILIDG
        H DHDH T   + +K+E+E LI+ GYLKE     ++         +R +N+V +            S     QL      +   +L  ANVKVHRIL+DG
Subjt:  HEDHDHTT-GVYTVKDEIETLIQEGYLKEFVGMTEED--------HRTENQVENE-----------SRSSRAQLEPGEQGS---SLTAANVKVHRILIDG

Query:  GSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG----------------------------------ASTYHQVLKFPTKE
        GSSAD++S   Y AM L    L+S   PLVGFGGE      + +   T  SG                                   STYHQ +KFPT  
Subjt:  GSSADVLSIAVYDAMKLGRDRLRSCLTPLVGFGGE------KDDQTCTAQSG----------------------------------ASTYHQVLKFPTKE

Query:  GVGVVHGEQKMSRECYFMALKHMDR
        GV  + GEQ++SRECY+ +++  DR
Subjt:  GVGVVHGEQKMSRECYFMALKHMDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGGTCTAGCTGCAATACAAAAACATCCAGAAAAGTTAAAATCAGACCCAGACAGGAGAAACAGGAACACATATCGCATGTTCACGAAGACCACGACCATACTAC
TGGAGTGTATACAGTTAAGGATGAAATAGAAACCCTAATCCAGGAAGGCTACCTTAAGGAATTTGTGGGAATGACAGAGGAGGACCATCGGACGGAGAATCAAGTAGAAA
ATGAAAGTCGCAGTTCGAGAGCACAACTAGAACCAGGAGAGCAAGGTAGTAGCCTAACGGCTGCCAACGTAAAAGTTCACCGAATCCTTATCGACGGAGGAAGTTCTGCT
GATGTTCTCTCAATTGCTGTGTATGATGCAATGAAGCTAGGAAGGGATCGCCTAAGGTCGTGCCTCACACCATTGGTGGGTTTCGGTGGAGAAAAGGACGACCAAACTTG
CACGGCTCAAAGTGGTGCCTCTACTTATCACCAAGTTTTGAAGTTTCCAACTAAAGAAGGTGTAGGAGTGGTGCATGGCGAGCAGAAGATGTCAAGAGAGTGCTACTTCA
TGGCACTCAAACATATGGATAGGAAGGCTCAAACAGTGCCCACCTCGGGAAATAGCCGAGGCCGAGAATTTGAAGGATCAGATCATCCTCTTCCAATGGAATACTTGTTG
GGTTTTATGCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGGTCTAGCTGCAATACAAAAACATCCAGAAAAGTTAAAATCAGACCCAGACAGGAGAAACAGGAACACATATCGCATGTTCACGAAGACCACGACCATACTAC
TGGAGTGTATACAGTTAAGGATGAAATAGAAACCCTAATCCAGGAAGGCTACCTTAAGGAATTTGTGGGAATGACAGAGGAGGACCATCGGACGGAGAATCAAGTAGAAA
ATGAAAGTCGCAGTTCGAGAGCACAACTAGAACCAGGAGAGCAAGGTAGTAGCCTAACGGCTGCCAACGTAAAAGTTCACCGAATCCTTATCGACGGAGGAAGTTCTGCT
GATGTTCTCTCAATTGCTGTGTATGATGCAATGAAGCTAGGAAGGGATCGCCTAAGGTCGTGCCTCACACCATTGGTGGGTTTCGGTGGAGAAAAGGACGACCAAACTTG
CACGGCTCAAAGTGGTGCCTCTACTTATCACCAAGTTTTGAAGTTTCCAACTAAAGAAGGTGTAGGAGTGGTGCATGGCGAGCAGAAGATGTCAAGAGAGTGCTACTTCA
TGGCACTCAAACATATGGATAGGAAGGCTCAAACAGTGCCCACCTCGGGAAATAGCCGAGGCCGAGAATTTGAAGGATCAGATCATCCTCTTCCAATGGAATACTTGTTG
GGTTTTATGCCCTAA
Protein sequenceShow/hide protein sequence
MRRSSCNTKTSRKVKIRPRQEKQEHISHVHEDHDHTTGVYTVKDEIETLIQEGYLKEFVGMTEEDHRTENQVENESRSSRAQLEPGEQGSSLTAANVKVHRILIDGGSSA
DVLSIAVYDAMKLGRDRLRSCLTPLVGFGGEKDDQTCTAQSGASTYHQVLKFPTKEGVGVVHGEQKMSRECYFMALKHMDRKAQTVPTSGNSRGREFEGSDHPLPMEYLL
GFMP