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Lag0022682 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022682
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:35487031..35487348
RNA-Seq ExpressionLag0022682
SyntenyLag0022682
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]6.0e-2255.34Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TLTG  R WF  + RKSI SF+ELARAFVTQF G  +R +P   LLT+KQ   ESLK Y++RF+ + LQVEG  D V L   ISG++DE+L+ S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]7.3e-2051.46Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TL+G AR WF  + R SI SF+ LA+AFVTQF+G RSR +P   LLT+KQ   ESL  Y++RF+ + LQVEG  + V+L A +S ++DE L  S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]8.4e-2457.28Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TLTG AR WF  + R SI SF+ELA AFVTQF+G R + KP   LLT+KQ   ESLK Y++RF+ + LQVEG  D VAL A +SG++DERL+ S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]6.6e-2153.4Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TL G AR WF  + R SI SF+ LARAFVTQF+G R R +P   LLT+KQ   ESL+ Y++RF+ + LQVEG  D V+L A +SG++DE L  S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]3.6e-1952.58Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERL
        CR F+ TL G AR WF  + R SI SF+ LARAF+TQF+G R R +P   LLT+KQ   ESL  Y++RF+ + LQ+EG  D V+L A +SG++DE L
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERL

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166192.9e-2255.34Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TLTG  R WF  + RKSI SF+ELARAFVTQF G  +R +P   LLT+KQ   ESLK Y++RF+ + LQVEG  D V L   ISG++DE+L+ S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

A0A6J1D7D2 uncharacterized protein LOC1110183073.5e-2051.46Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TL+G AR WF  + R SI SF+ LA+AFVTQF+G RSR +P   LLT+KQ   ESL  Y++RF+ + LQVEG  + V+L A +S ++DE L  S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

A0A6J1DWY0 uncharacterized protein LOC1110252933.2e-2153.4Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TL G AR WF  + R SI SF+ LARAFVTQF+G R R +P   LLT+KQ   ESL+ Y++RF+ + LQVEG  D V+L A +SG++DE L  S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

A0A6J1DZ49 uncharacterized protein LOC1110248514.1e-2457.28Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS
        CR F+ TLTG AR WF  + R SI SF+ELA AFVTQF+G R + KP   LLT+KQ   ESLK Y++RF+ + LQVEG  D VAL A +SG++DERL+ S
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNS

Query:  IGE
         G+
Subjt:  IGE

A0A6J1E1E7 uncharacterized protein LOC1110255481.8e-1952.58Show/hide
Query:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERL
        CR F+ TL G AR WF  + R SI SF+ LARAF+TQF+G R R +P   LLT+KQ   ESL  Y++RF+ + LQ+EG  D V+L A +SG++DE L
Subjt:  CRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCGAGCCTTTGCAGTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCATGATCCCACGAAAGTCAATTGGTTCATTCAGAGAGCTGGCCCGAGCATTTGTTAC
GCAATTCCTAGGAGCCCGTAGCCGACAGAAGCCTCAAATCAACTTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGCATTATATTAGCAGATTTAGTAACAAAG
TTTTGCAGGTGGAAGGTTACGACGACGGGGTCGCCTTGACTGCTGTGATTTCAGGTTTGCAGGATGAGAGGCTGCTCAACTCAATCGGAGAGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTCGAGCCTTTGCAGTAACACTCACAGGTTTGGCAAGGCAATGGTTTGGCATGATCCCACGAAAGTCAATTGGTTCATTCAGAGAGCTGGCCCGAGCATTTGTTAC
GCAATTCCTAGGAGCCCGTAGCCGACAGAAGCCTCAAATCAACTTGCTGACAGTAAAGCAGGGGCCCCGAGAAAGCCTGAAGCATTATATTAGCAGATTTAGTAACAAAG
TTTTGCAGGTGGAAGGTTACGACGACGGGGTCGCCTTGACTGCTGTGATTTCAGGTTTGCAGGATGAGAGGCTGCTCAACTCAATCGGAGAGAGCTAG
Protein sequenceShow/hide protein sequence
MCRAFAVTLTGLARQWFGMIPRKSIGSFRELARAFVTQFLGARSRQKPQINLLTVKQGPRESLKHYISRFSNKVLQVEGYDDGVALTAVISGLQDERLLNSIGES