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Lag0022685 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022685
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:35542927..35543466
RNA-Seq ExpressionLag0022685
SyntenyLag0022685
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7808930.1 uncharacterized protein G2W53_035673 [Senna tora]6.0e-0633.94Show/hide
Query:  KAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTL
        +A A+  GL LAR+LE+H++ +  D   ++N I   +   + +  ++ NI     SF  VSF +I R+ N  A R   LG S+ S   WLENYP  +  +
Subjt:  KAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTL

Query:  SLNEQRLFA
           +  LF+
Subjt:  SLNEQRLFA

XP_024164210.1 uncharacterized protein LOC112171231 [Rosa chinensis]7.9e-0627.82Show/hide
Query:  DNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKY
        +  G CG+G+V  D  GNLK   +        P   +A A+L GLR A  +   R+ +  D+L++IN + +  +  +    ++  +    +SF + S  +
Subjt:  DNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKY

Query:  ISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWM
        + R+ N  AHR  +    +S  F  LE+ P W+
Subjt:  ISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWM

XP_024177947.1 uncharacterized protein LOC112183863 [Rosa chinensis]4.6e-0627.82Show/hide
Query:  DNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKY
        +  G CG+G+V  D  GNLK   +        P   +A A+L GLR A  +   R+ +  D L++IN + +  +  +    ++  +    +SF + S  +
Subjt:  DNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKY

Query:  ISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWM
        + R+ N  AHR  +    +S  F  LE+ P W+
Subjt:  ISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWM

XP_042962749.1 uncharacterized protein LOC122297028 [Carya illinoinensis]2.7e-0628.26Show/hide
Query:  GIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISRKYN
        GIGLVL D  GN+    S      +     +A AVL GL+   +  +++L + SD L LIN++N   +C +  A V+  I   +  F  +SF ++ R+ N
Subjt:  GIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISRKYN

Query:  SFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRLF
        + AH   R  +++     W +  P  +   +  ++++F
Subjt:  SFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRLF

XP_042974648.1 uncharacterized protein LOC122306281 [Carya illinoinensis]4.6e-0625.35Show/hide
Query:  NRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYI
        N+ +  IG++L D  G +    S      +  +  K  A+L GL+L+  L +H L + SDSL L+  + +     + +  V+ +  + K  F++   +++
Subjt:  NRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYI

Query:  SRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRL
         R  N  AHR  R   +++    W E++P  +  +  NE+ L
Subjt:  SRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRL

TrEMBL top hitse value%identityAlignment
A0A287TRG6 Reverse transcriptase domain-containing protein8.5e-0634.38Show/hide
Query:  AIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAV
        A+F D R   G G+VL D  G+     S G SV  TP  A+A AV  GL  A     HR+ + SD L+ I  I       + + AV+ +I      F++ 
Subjt:  AIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAV

Query:  SFKYISRKYNSFAHRTTRLGQSLSSSFS
         F++  R YN  AH+  R  +S S + S
Subjt:  SFKYISRKYNSFAHRTTRLGQSLSSSFS

A0A2P6QJ46 Putative ribonuclease H-like domain-containing protein8.5e-0629.77Show/hide
Query:  GTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISR
        G CG+G+V  D  G LK   +       +P   +A A+L GLR A  +   RL I  D+L++I  +  E    +    ++  +    +SFE  S  ++ R
Subjt:  GTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISR

Query:  KYNSFAHRTTRLGQSLSSSFSWLENYPGWMV
        + N  AHR  +    +S  F  LE+ P W++
Subjt:  KYNSFAHRTTRLGQSLSSSFSWLENYPGWMV

A0A7N2LPF9 Uncharacterized protein3.4e-0734.31Show/hide
Query:  AIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLG---AKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSF
        A+F + R   G+G+++ D  G+L     + S     PLG   A+A AV  GL  AR+L +   T+ SDSLTLIN + D     + +AA+V++      SF
Subjt:  AIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLG---AKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSF

Query:  EAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYP
          V F Y+ R  N  AH   R    ++    W+E  P
Subjt:  EAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYP

A0A7N2MEF4 RNase H domain-containing protein1.0e-0631.16Show/hide
Query:  LNTYAIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKS
        +NT     +  G CGIG+V+ +  G L    S    +    L  +A A+  G+ LA +L +  +T+ SDS  ++  + D+   Q  I  V+  I E  K 
Subjt:  LNTYAIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKS

Query:  FEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYP
        F A S  +  R  NS AH   R  + L+ S  W+E+ P
Subjt:  FEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYP

A0A7N2R607 RNase H domain-containing protein2.2e-0625.81Show/hide
Query:  LNTYAIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKS
        +N  A    N    GIG+++ D VG++ A  S+   +   PL A+A A+   +  A+E+ +  +T  SDSL LI  + D+ +    I  ++  I  + + 
Subjt:  LNTYAIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKS

Query:  FEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRLFASH
        F      ++ R  N+ AH   R    L +  +W+E  P ++ +  + +  LF+ +
Subjt:  FEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRLFASH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein6.0e-0428.28Show/hide
Query:  SSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISRKYNSFAHRTTRLGQSLSSS
        S+G     +PL A+A A+ + +  A +LE   L +LSDS ++++ +N  +        +V  I   +  F ++SF++I R  NS A    +L   +S +
Subjt:  SSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVVWNIGEEKKSFEAVSFKYISRKYNSFAHRTTRLGQSLSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCAGTCAAAGCAAGAGGTTTGTGGTATTATTTCAGAAGGAGAGGAGACAATTTTAAATACTTATGCAATTTTCATGGATAATAGGGGTACATGTGGTATTGGGCT
GGTTCTGCATGACAGGGTGGGTAATCTGAAAGCTATTCAGTCGTCAGGCTCTTCGGTTTGTTCAACTCCGTTAGGGGCGAAAGCGGCTGCGGTGCTAGCAGGACTCCGTC
TTGCTAGGGAGTTGGAGGTGCATAGGTTGACGATTCTGTCGGATTCATTGACGTTAATAAACATTATTAACGACGAAATCCAATGTCAGGCTTGCATTGCTGCAGTGGTT
TGGAATATTGGAGAAGAGAAGAAATCATTTGAAGCGGTCTCGTTTAAATATATTAGCCGAAAATACAATAGTTTTGCTCATAGAACAACCCGATTGGGTCAGTCGTTGTC
GTCGTCCTTTTCGTGGTTAGAAAATTATCCTGGATGGATGGTTACTTTGTCGCTCAATGAGCAACGTTTGTTTGCTTCACATTGGGATTCTGTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCAGTCAAAGCAAGAGGTTTGTGGTATTATTTCAGAAGGAGAGGAGACAATTTTAAATACTTATGCAATTTTCATGGATAATAGGGGTACATGTGGTATTGGGCT
GGTTCTGCATGACAGGGTGGGTAATCTGAAAGCTATTCAGTCGTCAGGCTCTTCGGTTTGTTCAACTCCGTTAGGGGCGAAAGCGGCTGCGGTGCTAGCAGGACTCCGTC
TTGCTAGGGAGTTGGAGGTGCATAGGTTGACGATTCTGTCGGATTCATTGACGTTAATAAACATTATTAACGACGAAATCCAATGTCAGGCTTGCATTGCTGCAGTGGTT
TGGAATATTGGAGAAGAGAAGAAATCATTTGAAGCGGTCTCGTTTAAATATATTAGCCGAAAATACAATAGTTTTGCTCATAGAACAACCCGATTGGGTCAGTCGTTGTC
GTCGTCCTTTTCGTGGTTAGAAAATTATCCTGGATGGATGGTTACTTTGTCGCTCAATGAGCAACGTTTGTTTGCTTCACATTGGGATTCTGTTTCTTAA
Protein sequenceShow/hide protein sequence
MAQSKQEVCGIISEGEETILNTYAIFMDNRGTCGIGLVLHDRVGNLKAIQSSGSSVCSTPLGAKAAAVLAGLRLARELEVHRLTILSDSLTLINIINDEIQCQACIAAVV
WNIGEEKKSFEAVSFKYISRKYNSFAHRTTRLGQSLSSSFSWLENYPGWMVTLSLNEQRLFASHWDSVS