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Lag0022695 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022695
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPre-mRNA-splicing factor SLU7
Genome locationchr7:35816603..35820108
RNA-Seq ExpressionLag0022695
SyntenyLag0022695
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0000386 - second spliceosomal transesterification activity (molecular function)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
InterPro domainsIPR039974 - Pre-mRNA-splicing factor SLU7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020985.1 Protein prenyltransferase alpha subunit repeat-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma]2.2e-1237.23Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS LS+DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQL++KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

XP_022937607.1 protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1 [Cucurbita moschata]2.2e-1237.23Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS LS+DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQL++KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

XP_022965495.1 geranylgeranyl transferase type-2 subunit alpha [Cucurbita maxima]2.2e-1237.23Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS L++DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQLE+KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

XP_023538442.1 protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X1 [Cucurbita pepo subsp. pepo]9.7e-1337.96Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS LS+DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQLE+KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

XP_023538443.1 protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 [Cucurbita pepo subsp. pepo]9.7e-1337.96Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS LS+DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQLE+KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

TrEMBL top hitse value%identityAlignment
A0A5A7REL7 Pre-mRNA-splicing factor SLU71.8e-0992.11Show/hide
Query:  GLPVAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        G+ VAFKSREDHRKQLELEEARKAGLAPAE+DEDGKEI
Subjt:  GLPVAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

A0A5J5CAS4 Pre-mRNA-splicing factor SLU71.1e-0994.74Show/hide
Query:  GLPVAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        GL VAFKSREDHRKQLELEEARKAGLAPAE+DEDGKEI
Subjt:  GLPVAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

A0A6J1D7W4 protein prenyltransferase alpha subunit repeat-containing protein 15.2e-1236.23Show/hide
Query:  RTEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE------------------------------------------------------------------
        RTE+SS LSID Y++WKEELDWDEM+IKRY+GRE                                                                  
Subjt:  RTEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE------------------------------------------------------------------

Query:  ---------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                 NCPK +VI+L++KLRAC+LKTLLYKACPE
Subjt:  ---------NCPKSNVIQLEKKLRACSLKTLLYKACPE

A0A6J1FBP7 protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X11.0e-1237.23Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS LS+DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQL++KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

A0A6J1HNV7 geranylgeranyl transferase type-2 subunit alpha1.0e-1237.23Show/hide
Query:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------
        TEISS L++DIYQ+WKEELDWDEM+IKRYVGRE                                                                   
Subjt:  TEISSDLSIDIYQLWKEELDWDEMMIKRYVGRE-------------------------------------------------------------------

Query:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE
                NCPK N+IQLE+KL+AC+LKTLLYK CPE
Subjt:  --------NCPKSNVIQLEKKLRACSLKTLLYKACPE

SwissProt top hitse value%identityAlignment
A2YQU8 Pre-mRNA-splicing factor SLU79.4e-1194.29Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        V+FKSREDHRKQLELEEARKAGLAPAE+DEDGKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

O23174 Pre-mRNA-splicing factor SLU7-B1.2e-1094.29Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        VAFKSREDHRK+LELEEARKAGLAPAE+DEDGKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

Q54TA0 Pre-mRNA-splicing factor slu71.7e-0465.62Show/hide
Query:  KSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        K+R++++K+ EL+EARKAG APAE+DE+GKEI
Subjt:  KSREDHRKQLELEEARKAGLAPAEIDEDGKEI

Q6ZK48 Pre-mRNA-splicing factor SLU79.4e-1194.29Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        V+FKSREDHRKQLELEEARKAGLAPAE+DEDGKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

Q9SHY8 Pre-mRNA-splicing factor SLU7-A7.2e-1194.29Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        VAFKSREDHRKQ+ELEEARKAGLAPAE+DEDGKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

Arabidopsis top hitse value%identityAlignment
AT1G10095.1 Protein prenylyltransferase superfamily protein6.7e-0443.14Show/hide
Query:  QLWKEELDWDEMMIKRYVGRENCPKSNVIQLEKKLRACSLKTLLYKACPES
        ++WKEELDW+E +++RYVGRE         L    R  SL  ++Y AC  S
Subjt:  QLWKEELDWDEMMIKRYVGRENCPKSNVIQLEKKLRACSLKTLLYKACPES

AT1G65660.1 Pre-mRNA splicing Prp18-interacting factor5.1e-1294.29Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        VAFKSREDHRKQ+ELEEARKAGLAPAE+DEDGKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

AT3G45950.1 Pre-mRNA splicing Prp18-interacting factor2.8e-1088.57Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        VAFKSR+DHRKQ ELEEARKAGLAPAE+DE GKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI

AT4G37120.1 Pre-mRNA splicing Prp18-interacting factor8.7e-1294.29Show/hide
Query:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI
        VAFKSREDHRK+LELEEARKAGLAPAE+DEDGKEI
Subjt:  VAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCACGAAATCGTGTACGTGGTACACGATTTCATTAAGTTAATCGTGTACCGGGTACACGATTTCATTAAGGAAATCGTGTACCTGGTACACGATTTCGCTGGCGT
GCAACACATCAACGCCAAATCATCGCCCAACCTGGTGATGTGTGCCTTGTCAGCGTGCCAACATGGAAGTCGTGTACCTGCACAGTCGCATGCCATTCGTGGTCTTCGCA
GTTCTGTATTCGTGGTCTTCGTAGCACCGTTCAACCTCCTCGCAGCACCTGTCAAGAGAACAGAAATAAGTTCTGATCTCAGCATTGACATTTATCAACTGTGGAAGGAA
GAGCTTGATTGGGATGAAATGATGATAAAGCGATATGTTGGAAGAGAGAATTGTCCAAAGTCTAATGTGATTCAATTGGAGAAGAAGCTTAGAGCATGCAGTTTGAAGAC
TTTGCTTTACAAAGCATGCCCAGAAAGTGTGCCTGGAACAACTTTTGGTCTTCCAGTTGCTTTCAAATCTAGGGAAGACCATCGCAAACAACTTGAATTAGAGGAAGCGC
GTAAGGCCGGGCTTGCACCAGCTGAGATTGATGAAGATGGGAAAGAAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCACGAAATCGTGTACGTGGTACACGATTTCATTAAGTTAATCGTGTACCGGGTACACGATTTCATTAAGGAAATCGTGTACCTGGTACACGATTTCGCTGGCGT
GCAACACATCAACGCCAAATCATCGCCCAACCTGGTGATGTGTGCCTTGTCAGCGTGCCAACATGGAAGTCGTGTACCTGCACAGTCGCATGCCATTCGTGGTCTTCGCA
GTTCTGTATTCGTGGTCTTCGTAGCACCGTTCAACCTCCTCGCAGCACCTGTCAAGAGAACAGAAATAAGTTCTGATCTCAGCATTGACATTTATCAACTGTGGAAGGAA
GAGCTTGATTGGGATGAAATGATGATAAAGCGATATGTTGGAAGAGAGAATTGTCCAAAGTCTAATGTGATTCAATTGGAGAAGAAGCTTAGAGCATGCAGTTTGAAGAC
TTTGCTTTACAAAGCATGCCCAGAAAGTGTGCCTGGAACAACTTTTGGTCTTCCAGTTGCTTTCAAATCTAGGGAAGACCATCGCAAACAACTTGAATTAGAGGAAGCGC
GTAAGGCCGGGCTTGCACCAGCTGAGATTGATGAAGATGGGAAAGAAATATAA
Protein sequenceShow/hide protein sequence
MDHEIVYVVHDFIKLIVYRVHDFIKEIVYLVHDFAGVQHINAKSSPNLVMCALSACQHGSRVPAQSHAIRGLRSSVFVVFVAPFNLLAAPVKRTEISSDLSIDIYQLWKE
ELDWDEMMIKRYVGRENCPKSNVIQLEKKLRACSLKTLLYKACPESVPGTTFGLPVAFKSREDHRKQLELEEARKAGLAPAEIDEDGKEI