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Lag0022811 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022811
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr7:38596293..38597396
RNA-Seq ExpressionLag0022811
SyntenyLag0022811
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023890148.1 uncharacterized protein LOC112002224 [Quercus suber]1.6e-2840.31Show/hide
Query:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS
        ++P   NET IVLIPK+K P+ V ++R ISLCNV YKLA                                             +RK + G ++LKLDMS
Subjt:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS

Query:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL
        K YDRVE   LE+IM+K+GF   WV L+  CI++V +S  +N    G +  S GLRQGD +SPYLF++CAEGLS +LH+A  ++ + G+ +
Subjt:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL

XP_023896927.1 uncharacterized protein LOC112008817 [Quercus suber]1.2e-2843.39Show/hide
Query:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKL---------------------------------------------ARRKRRTGWVSLKLDMSKT
        P  LN T I LIPK+K PR+V+E+R ISLCNV YKL                                              +R  +TG++S+KLDMSKT
Subjt:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKL---------------------------------------------ARRKRRTGWVSLKLDMSKT

Query:  YDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL
        YDRVE VYLEKIM KMGF  +W+ LI++CI SV +S  +N    G +  + GLRQGD LSPYLF+L  EGL  +  EA+ +  I G+ L
Subjt:  YDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL

XP_030932272.1 uncharacterized protein LOC115958047 [Quercus lobata]4.1e-3245.55Show/hide
Query:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS
        + P   NET I LIPK+K P+RV+++R ISLCNV YKLA                                             RRK R G ++LKLDMS
Subjt:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS

Query:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL
        K YDRVE   LE+IMLKMGFA +WV LI  CI SV ++  +N +  G +  S GLRQGD LSPYLF+LCAEGLS MLH+A   K++ G+ +
Subjt:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL

XP_030963678.1 uncharacterized protein LOC115984820 [Quercus lobata]2.5e-2939.06Show/hide
Query:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS
        ++P   ++T IVLIPK K P +V++YR ISLCNV YK+A                                             ++K   G +++KLDM 
Subjt:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS

Query:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS
        K YDRVE   L++IM K+GF  +W+ L+  C++SV++   VN + CG ++ + GLRQGD LSPYLF++CAEGLS +LH+A + KAI G+  S
Subjt:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS

XP_031090853.1 uncharacterized protein LOC115995843 [Ipomoea triloba]1.9e-2946.75Show/hide
Query:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYK-----LARRKRR-----------------------TGWVSLKLDMSKTYDRVELVYLEKIMLKMG
        P  LN T +VLIPK K P RVS+ R I+LCNV YK     LA R +R                        GW +LKLDM+K YDR+E  +LE+++  +G
Subjt:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYK-----LARRKRR-----------------------TGWVSLKLDMSKTYDRVELVYLEKIMLKMG

Query:  FASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMG
        F  +WVELI LC+S+V +SF +N     DV  S GLRQGD LSPYLFI+CAEG+S +L +A+   +I G
Subjt:  FASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMG

TrEMBL top hitse value%identityAlignment
A0A2N9F5Y8 Reverse transcriptase domain-containing protein1.6e-2949.37Show/hide
Query:  LNETMIVLIPKMKRPRRVSEYRLISLCNVTYKL-----------------ARRKRRTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLCIS
        +N+T I LIPK+K P RV+E+R ISLCNV YK+                 + +  R G ++LKLDMSK YDRVE  YLEK+M KMGF   W+ L  +CIS
Subjt:  LNETMIVLIPKMKRPRRVSEYRLISLCNVTYKL-----------------ARRKRRTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLCIS

Query:  SVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL
         V +S  +N    G +K S GLRQGD LSPYLF+LCAEGL  M+  AE  + + G+ L
Subjt:  SVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL

A0A2N9FGD9 Reverse transcriptase domain-containing protein2.7e-2948.41Show/hide
Query:  TPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYK-----LARRKRRT------------GWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLC
        T +N T + LIPK++ P  V ++R ISLCNV YK     LA R ++T            G+++LKLDM K YDRVE V+LE IMLKMGF + WV +I  C
Subjt:  TPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYK-----LARRKRRT------------GWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLC

Query:  ISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMG
        + +V +S  +N    G    S GLRQGD +SPYLF+LCAEGL  +L +A +SK+I G
Subjt:  ISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMG

A0A453KYU3 Reverse transcriptase domain-containing protein7.1e-3049.66Show/hide
Query:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKL-ARRKR--RTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEV
        P   N T+IVLIPKM +P R+++ R ISLCNV YKL A+RK+  R G+ ++KL+MSK YDRVE  +L++IMLK+GF   WV+L+  C+++V++   +N  
Subjt:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKL-ARRKR--RTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEV

Query:  RCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL
            +    GL QGD LSPYLF+LCAEG S ML  AE +  + G+K+
Subjt:  RCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL

A0A7N2R0C3 Reverse transcriptase domain-containing protein2.1e-2940.84Show/hide
Query:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS
        V P  +NET I LIPK+K P++++EYR ISLCNV YKL                                              RRK + G +++KLDMS
Subjt:  VSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA---------------------------------------------RRKRRTGWVSLKLDMS

Query:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL
        K YDRVE  YLE IM +MGF   W+ L+ +C+++V FS  +N    G +  + GLRQGD +SPYLF+LCAEGLS ML   E+ +A+ G+++
Subjt:  KTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKL

A0A803QHU3 Uncharacterized protein2.9e-3150.67Show/hide
Query:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA-----RRKRRTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVN
        PT LN T+I LIPK+K+P+ + +YR ISLCNV  KL      R   R G VSLKLDMSK +DRVE  ++E++M KMGFA +W+ LI  C+S+  FSF +N
Subjt:  PTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLA-----RRKRRTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVN

Query:  EVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS
            G +  + GLRQG  L PYLF++C+EGLS ML   E++  + G KL+
Subjt:  EVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein2.6e-0524.59Show/hide
Query:  PTPLNETMIVLIPK-MKRPRRVSEYRLISLCNVTYK-----LARRKRR-----------------TGWVSLK---------------------LDMSKTY
        P    E  I LIPK  K P ++  +R ISL N+  K     LA R +                   GW +++                     LD  K +
Subjt:  PTPLNETMIVLIPK-MKRPRRVSEYRLISLCNVTYK-----LARRKRR-----------------TGWVSLK---------------------LDMSKTY

Query:  DRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAI
        D+++  ++ K++ + G    ++ +I    S    +  VN  +   + L  G RQG  LSPYLF +  E L+  + + +  K I
Subjt:  DRVELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAI

P92555 Uncharacterized mitochondrial protein AtMg012509.9e-0548.15Show/hide
Query:  FNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS
        F +N    G V  S GLRQGD LSPYLFILC E LS +   A+    + G+++S
Subjt:  FNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases3.4e-0830.17Show/hide
Query:  PRRVSEYRLISLCNVTYKLARRKRRTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWV-ELISLCISSVRFSFNVNEV------RCGDVKLSWGLRQ
        P RVS   ++ +    + + R+K   GW+ LKLD+ K YDR+   YLE  ++  GF   W+ E+      + R +  V         R  D +  WG R 
Subjt:  PRRVSEYRLISLCNVTYKLARRKRRTGWVSLKLDMSKTYDRVELVYLEKIMLKMGFASEWV-ELISLCISSVRFSFNVNEV------RCGDVKLSWGLRQ

Query:  GDLLSPYL--FILCAE
         D+ +P+    + CAE
Subjt:  GDLLSPYL--FILCAE

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)7.0e-0648.15Show/hide
Query:  FNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS
        F +N    G V  S GLRQGD LSPYLFILC E LS +   A+    + G+++S
Subjt:  FNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGTTTAGGCAGGTCAACATCTCGGGCTGAGTTGCAAAAGGTAGAAGGCCAGCTTGAGTCTCTCCTTATAGAGGAGAGGCCACCTAGTACGACTCTTTCAGTAGG
AGGAGATCCTTTTAGCTCTGAAGTAGATCCACCCTGGGTCTCACCAACGCCTTTGAATGAAACAATGATTGTCCTGATCCCAAAGATGAAAAGGCCTAGACGTGTGTCAG
AATACCGTCTCATTTCCCTCTGTAATGTGACGTATAAACTGGCAAGACGAAAAAGGAGAACGGGGTGGGTCTCACTTAAGCTAGATATGAGCAAGACTTACGACAGAGTA
GAGTTGGTGTATCTGGAGAAGATCATGTTGAAAATGGGGTTTGCTTCAGAATGGGTAGAGTTGATCTCTTTGTGTATCTCATCAGTCCGGTTCTCCTTTAATGTGAATGA
GGTTAGGTGTGGGGATGTGAAGCTTAGTTGGGGTCTAAGACAGGGTGATCTGCTATCCCCTTATTTGTTTATCCTTTGTGCTGAAGGGCTATCATGCATGCTCCACGAAG
CTGAGGTGTCAAAGGCTATTATGGGACTGAAGCTATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGTTTAGGCAGGTCAACATCTCGGGCTGAGTTGCAAAAGGTAGAAGGCCAGCTTGAGTCTCTCCTTATAGAGGAGAGGCCACCTAGTACGACTCTTTCAGTAGG
AGGAGATCCTTTTAGCTCTGAAGTAGATCCACCCTGGGTCTCACCAACGCCTTTGAATGAAACAATGATTGTCCTGATCCCAAAGATGAAAAGGCCTAGACGTGTGTCAG
AATACCGTCTCATTTCCCTCTGTAATGTGACGTATAAACTGGCAAGACGAAAAAGGAGAACGGGGTGGGTCTCACTTAAGCTAGATATGAGCAAGACTTACGACAGAGTA
GAGTTGGTGTATCTGGAGAAGATCATGTTGAAAATGGGGTTTGCTTCAGAATGGGTAGAGTTGATCTCTTTGTGTATCTCATCAGTCCGGTTCTCCTTTAATGTGAATGA
GGTTAGGTGTGGGGATGTGAAGCTTAGTTGGGGTCTAAGACAGGGTGATCTGCTATCCCCTTATTTGTTTATCCTTTGTGCTGAAGGGCTATCATGCATGCTCCACGAAG
CTGAGGTGTCAAAGGCTATTATGGGACTGAAGCTATCATGA
Protein sequenceShow/hide protein sequence
MEGLGRSTSRAELQKVEGQLESLLIEERPPSTTLSVGGDPFSSEVDPPWVSPTPLNETMIVLIPKMKRPRRVSEYRLISLCNVTYKLARRKRRTGWVSLKLDMSKTYDRV
ELVYLEKIMLKMGFASEWVELISLCISSVRFSFNVNEVRCGDVKLSWGLRQGDLLSPYLFILCAEGLSCMLHEAEVSKAIMGLKLS