CuGenDBv2

Gene ID	Lag0022822
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr7:38845913..38846524
RNA-Seq Expression	Lag0022822
Synteny	Lag0022822
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003824 - catalytic activity (molecular function) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.8e-64

68.32

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Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

KAA0045363.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

4.5e-64

68.32

Show/hide

Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRL T LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+AS+SDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSITKEKSTVE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

5.8e-64

68.32

Show/hide

Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]

5.8e-64

68.32

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Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]

5.8e-64

68.32

Show/hide

Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

2.8e-64

68.32

Show/hide

Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

A0A5A7TP97 Reverse transcriptase

2.2e-64

68.32

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Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRL T LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+AS+SDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSITKEKSTVE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

A0A5A7U2V7 Reverse transcriptase

2.8e-64

68.32

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Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

A0A5D3BHI1 Reverse transcriptase

2.8e-64

68.32

Show/hide

Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

A0A5D3BS67 Reverse transcriptase

2.8e-64

68.32

Show/hide

Query:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK
        GST+PAD E WLNMLEKCFDVM+ PEERKVRLAT LLQKEAEGWWKSILA+RSDA                                      +A+YERK
Subjt:  GSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDA--------------------------------------LAKYERK

Query:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS
        YT+LSRYADVI+ASESDRCRRFERGLRFEIRT V  I+KWT+FSQLVETALRVEQSIT+EKS VE S G STAS FRGREQRRFTPG++IS RQDFK RS
Subjt:  YTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLVETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRS

Query:  GG
        GG
Subjt:  GG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTTCCACAAATCCAGCTGACACCGAGGTTTGGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTATCCTGAGGAGCGAAAAGTTAGATTAGCCACAATCCT
TCTGCAGAAGGAGGCAGAGGGATGGTGGAAGTCCATTCTAGCCAAGCGTAGTGATGCATTGGCCAAGTATGAGAGAAAGTATACCAAGCTTTCACGGTATGCCGATGTGA
TTGTGGCATCTGAGAGTGATAGGTGTCGAAGGTTTGAAAGAGGACTACGTTTTGAGATACGTACCCTGGTTATAACTATTTCCAAGTGGACGGATTTTTCCCAATTAGTA
GAGACTGCCTTACGTGTGGAGCAGAGTATAACAAAGGAAAAGTCGACAGTGGAGCCTAGTTGTGGGGCTTCAACAGCTAGCGATTTCCGAGGTCGTGAGCAGCGGAGGTT
CACACCTGGCGTGAGTATTTCAGGCCGTCAAGACTTTAAGCGTCGGTCTGGTGGCTAG

mRNA sequence

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Protein sequence

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MGSTNPADTEVWLNMLEKCFDVMSYPEERKVRLATILLQKEAEGWWKSILAKRSDALAKYERKYTKLSRYADVIVASESDRCRRFERGLRFEIRTLVITISKWTDFSQLV
ETALRVEQSITKEKSTVEPSCGASTASDFRGREQRRFTPGVSISGRQDFKRRSGG

Lag0022822 (gene) of Sponge gourd (AG-4) v1 genome