; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022844 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022844
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr7:39317379..39321459
RNA-Seq ExpressionLag0022844
SyntenyLag0022844
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388376.1 uncharacterized protein LOC102612209 [Citrus sinensis]1.2e-0532.73Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN
        +SNG +I A  K++S +  +  +E +AI  G++      +  EC+   P+ +ESDS EVV L+ +    +++IS+ VEE++   M     S    PR CN
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN

Query:  FLAHLLARAA
         +AH + + A
Subjt:  FLAHLLARAA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.6e-0534.51Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN
        D  G +I+A C+ I     I  LE+ AI  GL+     +R   C   +PI +ESDS E ++LL+    D ++I +++EE+  +    ++VS     R+ N
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN

Query:  FLAHLLARAASVN
         +AH LAR A  N
Subjt:  FLAHLLARAASVN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.1e-0938.14Show/hide
Query:  NGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCNFL
        +G ++ AG + +   + +K+LE  AI  GL+NLT NL       L+P+ +E+DSAEV +LLN    DL+K  ++VEE+  L  + ++++F+K  R+ N  
Subjt:  NGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCNFL

Query:  AHLLARAASVNGDFVFFV
        AH LA+ ASV  + + +V
Subjt:  AHLLARAASVNGDFVFFV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-0534.21Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNL-TGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDC
        D  G +I+A C+ I     I  LE+ AI  GL+ +   + R  +    +PI +ESDS E ++LL+    D ++I +++EE+  +    K+VS     R+ 
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNL-TGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDC

Query:  NFLAHLLARAASVN
        N +AH LAR A  N
Subjt:  NFLAHLLARAASVN

XP_024046691.1 uncharacterized protein LOC112101027 [Citrus clementina]7.1e-0634.17Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN
        +S G ++ A  K       +   + +AI+ GL+         E +R  P+ VESDS EVV+L+N  +   ++I ++  EV+        V     PR CN
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN

Query:  FLAHLLARAASVNGDFVFFV
         LAH LAR A    DFVF+V
Subjt:  FLAHLLARAASVNGDFVFFV

TrEMBL top hitse value%identityAlignment
A0A5C7IFK3 RNase H domain-containing protein7.2e-0427.34Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN
        DS+G +++A       R  + + E KAI  G+   T +        L+ + +ESDS  VV L N +    + +  ++ +++ L    + +S S  PR CN
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN

Query:  FLAHLLA-RAASVNGDFVFFVPPPCVLR
         +AH +A RA  +    + + P P  L+
Subjt:  FLAHLLA-RAASVNGDFVFFVPPPCVLR

A0A6J1CP26 uncharacterized protein LOC1110134127.6e-0634.51Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN
        D  G +I+A C+ I     I  LE+ AI  GL+     +R   C   +PI +ESDS E ++LL+    D ++I +++EE+  +    ++VS     R+ N
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCN

Query:  FLAHLLARAASVN
         +AH LAR A  N
Subjt:  FLAHLLARAASVN

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-0938.14Show/hide
Query:  NGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCNFL
        +G ++ AG + +   + +K+LE  AI  GL+NLT NL       L+P+ +E+DSAEV +LLN    DL+K  ++VEE+  L  + ++++F+K  R+ N  
Subjt:  NGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDCNFL

Query:  AHLLARAASVNGDFVFFV
        AH LA+ ASV  + + +V
Subjt:  AHLLARAASVNGDFVFFV

A0A6J1DSV1 uncharacterized protein LOC1110236085.9e-0634.21Show/hide
Query:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNL-TGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDC
        D  G +I+A C+ I     I  LE+ AI  GL+ +   + R  +    +PI +ESDS E ++LL+    D ++I +++EE+  +    K+VS     R+ 
Subjt:  DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNL-TGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSFSKFPRDC

Query:  NFLAHLLARAASVN
        N +AH LAR A  N
Subjt:  NFLAHLLARAASVN

B8AFN2 RNase H domain-containing protein2.5e-0433.09Show/hide
Query:  LKPQIQGISDGRFC---------DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIV
        +K  + G  D   C         DS+G+ I A CK +++       EL+A   GL NL  +        L PI VE+D   VV LLN    D S+++ IV
Subjt:  LKPQIQGISDGRFC---------DSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIV

Query:  EEVEALAMAPKVVSFSKFPRDCNFLAHLLARAASVN
         E + L    + +  SK  R  N ++HLLA  A V+
Subjt:  EEVEALAMAPKVVSFSKFPRDCNFLAHLLARAASVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCGTGGTTTGAAGCCTCAAATTCAGGGGATCTCGGATGGGCGATTTTGTGACTCAAATGGGTCTCTAATTAGAGCAGGGTGCAAGAAAATTAGCAAGCGCGATCC
AATTAAAGTGTTGGAATTAAAAGCCATCAAGTTAGGGCTTAAGAACCTTACCGGAAATCTCCGCGCTGGCGAGTGCATCCGACTAAAGCCAATCGAGGTTGAATCTGATT
CGGCTGAAGTGGTGAATTTGCTGAACCACGACTCTCTGGACCTTTCGAAAATCTCCTTCATCGTCGAGGAAGTCGAAGCTCTGGCTATGGCGCCGAAGGTTGTCTCATTC
TCGAAGTTTCCAAGAGACTGCAATTTTTTGGCGCACCTCCTTGCACGTGCAGCGTCTGTGAATGGGGATTTTGTATTTTTTGTTCCCCCGCCTTGTGTCCTAAGAGGAGA
GGGCTTTTGTCCCAAGGATCCGCACCTCAAGCAACAAGCGGCTAATCCCAAACTCCGCTCTCCATTTAACGCCCCCGACTCTGTCGACCTTGGGATCGCCCGTTGGAAAC
TCGATCTCGAGGCGGTGGATCCGAGTGAACTGGCGGAGGAATTGCGCCGGAGAGTTCTGCGACTCGGATTGTACGAGAATAGGGGAAATCAAATTGAAGAACGACTTGAC
GACGAAATGATAGAAATCAAAATGAAGGTTGAAATTGAAGCTGAAATCGTGAGGGAAATGAAATGGAGAATACGGAAGAATGAACAAGACGGGAGATGGAGAAGAAGACC
GATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCTAATAGAAAGGGCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGCGTGGTTTGAAGCCTCAAATTCAGGGGATCTCGGATGGGCGATTTTGTGACTCAAATGGGTCTCTAATTAGAGCAGGGTGCAAGAAAATTAGCAAGCGCGATCC
AATTAAAGTGTTGGAATTAAAAGCCATCAAGTTAGGGCTTAAGAACCTTACCGGAAATCTCCGCGCTGGCGAGTGCATCCGACTAAAGCCAATCGAGGTTGAATCTGATT
CGGCTGAAGTGGTGAATTTGCTGAACCACGACTCTCTGGACCTTTCGAAAATCTCCTTCATCGTCGAGGAAGTCGAAGCTCTGGCTATGGCGCCGAAGGTTGTCTCATTC
TCGAAGTTTCCAAGAGACTGCAATTTTTTGGCGCACCTCCTTGCACGTGCAGCGTCTGTGAATGGGGATTTTGTATTTTTTGTTCCCCCGCCTTGTGTCCTAAGAGGAGA
GGGCTTTTGTCCCAAGGATCCGCACCTCAAGCAACAAGCGGCTAATCCCAAACTCCGCTCTCCATTTAACGCCCCCGACTCTGTCGACCTTGGGATCGCCCGTTGGAAAC
TCGATCTCGAGGCGGTGGATCCGAGTGAACTGGCGGAGGAATTGCGCCGGAGAGTTCTGCGACTCGGATTGTACGAGAATAGGGGAAATCAAATTGAAGAACGACTTGAC
GACGAAATGATAGAAATCAAAATGAAGGTTGAAATTGAAGCTGAAATCGTGAGGGAAATGAAATGGAGAATACGGAAGAATGAACAAGACGGGAGATGGAGAAGAAGACC
GATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCTAATAGAAAGGGCATTTTAG
Protein sequenceShow/hide protein sequence
MRRGLKPQIQGISDGRFCDSNGSLIRAGCKKISKRDPIKVLELKAIKLGLKNLTGNLRAGECIRLKPIEVESDSAEVVNLLNHDSLDLSKISFIVEEVEALAMAPKVVSF
SKFPRDCNFLAHLLARAASVNGDFVFFVPPPCVLRGEGFCPKDPHLKQQAANPKLRSPFNAPDSVDLGIARWKLDLEAVDPSELAEELRRRVLRLGLYENRGNQIEERLD
DEMIEIKMKVEIEAEIVREMKWRIRKNEQDGRWRRRPMEMTGKVEKKWKLIERAF