| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0047446.1 pol protein [Cucumis melo var. makuwa] | 1.5e-62 | 59.56 | Show/hide |
Query: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
S D A +EAV W + ++ + L Q+LV+APVLTVPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK++E NYPTHDLEL
Subjt: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
Query: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
AAVV LKIWR+Y+WLELVKDYD EILYHP K NVVAD LSR+ +H++ALIT Q + D+E A I V VG V QLAQLTI PTLRQ IID+Q +D
Subjt: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
Query: SDLFHQVESSQGDEFSLSSDYGLLF
+ E+ Q EFS+SSD GLLF
Subjt: SDLFHQVESSQGDEFSLSSDYGLLF
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| KAA0049956.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 3.4e-62 | 57.14 | Show/hide |
Query: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
V S S D A +EAV WP + V+E +L Q+LV+APVL VPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK+
Subjt: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
Query: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
+E NYPTHDLELAAVV LKIWR+Y+ WLELVKDYD EILYHP K N+VAD LSR+ H++ALIT Q + D E I V VGEV SQLAQL++ PTLR
Subjt: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
Query: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
Q II +Q +D + H VE+ QG++FS+SSD GL+F
Subjt: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
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| TYJ98640.1 pol protein [Cucumis melo var. makuwa] | 1.5e-62 | 59.56 | Show/hide |
Query: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
S D A +EAV W + ++ + L Q+LV+APVLTVPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK++E NYPTHDLEL
Subjt: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
Query: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
AAVV LKIWR+Y+WLELVKDYD EILYHP K NVVAD LSR+ +H++ALIT Q + D+E A I V VG V QLAQLTI PTLRQ IID+Q +D
Subjt: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
Query: SDLFHQVESSQGDEFSLSSDYGLLF
+ E+ Q EFS+SSD GLLF
Subjt: SDLFHQVESSQGDEFSLSSDYGLLF
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| TYK01676.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 8.9e-63 | 60.37 | Show/hide |
Query: DLAIVEAVVKWPHSTIVAE---------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLK
D A +EAV WP + V+E L Q+LV+APVLTVPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK++E NYPTHDLELA VV LK
Subjt: DLAIVEAVVKWPHSTIVAE---------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLK
Query: IWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNFSDLFHQVE
IWR+Y+WLELVKDYD EILYHP K NVVAD LSR+ +H++ LIT Q + D++ I V VG V QLAQLT+ PTLRQ IID+Q +D + E
Subjt: IWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNFSDLFHQVE
Query: SSQGDEFSLSSDYGLLF
+ Q EFS+SSD GLLF
Subjt: SSQGDEFSLSSDYGLLF
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| TYK07688.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 3.4e-62 | 57.14 | Show/hide |
Query: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
V S S D A +EAV WP + V+E +L Q+LV+APVL VPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK+
Subjt: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
Query: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
+E NYPTHDLELAAVV LKIWR+Y+ WLELVKDYD EILYHP K N+VAD LSR+ H++ALIT Q + D E I V VGEV SQLAQL++ PTLR
Subjt: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
Query: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
Q II +Q +D + H VE+ QG++FS+SSD GL+F
Subjt: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TZP2 Pol protein | 7.3e-63 | 59.56 | Show/hide |
Query: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
S D A +EAV W + ++ + L Q+LV+APVLTVPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK++E NYPTHDLEL
Subjt: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
Query: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
AAVV LKIWR+Y+WLELVKDYD EILYHP K NVVAD LSR+ +H++ALIT Q + D+E A I V VG V QLAQLTI PTLRQ IID+Q +D
Subjt: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
Query: SDLFHQVESSQGDEFSLSSDYGLLF
+ E+ Q EFS+SSD GLLF
Subjt: SDLFHQVESSQGDEFSLSSDYGLLF
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| A0A5A7U6Z9 Ty3-gypsy retrotransposon protein | 1.6e-62 | 57.14 | Show/hide |
Query: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
V S S D A +EAV WP + V+E +L Q+LV+APVL VPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK+
Subjt: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
Query: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
+E NYPTHDLELAAVV LKIWR+Y+ WLELVKDYD EILYHP K N+VAD LSR+ H++ALIT Q + D E I V VGEV SQLAQL++ PTLR
Subjt: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
Query: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
Q II +Q +D + H VE+ QG++FS+SSD GL+F
Subjt: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
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| A0A5D3BFS1 Pol protein | 7.3e-63 | 59.56 | Show/hide |
Query: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
S D A +EAV W + ++ + L Q+LV+APVLTVPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK++E NYPTHDLEL
Subjt: SRDLAIVEAVVKWPHSTIVA---------------EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLEL
Query: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
AAVV LKIWR+Y+WLELVKDYD EILYHP K NVVAD LSR+ +H++ALIT Q + D+E A I V VG V QLAQLTI PTLRQ IID+Q +D
Subjt: AAVVSGLKIWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNF
Query: SDLFHQVESSQGDEFSLSSDYGLLF
+ E+ Q EFS+SSD GLLF
Subjt: SDLFHQVESSQGDEFSLSSDYGLLF
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| A0A5D3BTX5 Ty3-gypsy retrotransposon protein | 4.3e-63 | 60.37 | Show/hide |
Query: DLAIVEAVVKWPHSTIVAE---------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLK
D A +EAV WP + V+E L Q+LV+APVLTVPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK++E NYPTHDLELA VV LK
Subjt: DLAIVEAVVKWPHSTIVAE---------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLK
Query: IWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNFSDLFHQVE
IWR+Y+WLELVKDYD EILYHP K NVVAD LSR+ +H++ LIT Q + D++ I V VG V QLAQLT+ PTLRQ IID+Q +D + E
Subjt: IWRYYIWLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLRQHIIDSQKDDRNFSDLFHQVE
Query: SSQGDEFSLSSDYGLLF
+ Q EFS+SSD GLLF
Subjt: SSQGDEFSLSSDYGLLF
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| A0A5D3C942 Ty3-gypsy retrotransposon protein | 1.6e-62 | 57.14 | Show/hide |
Query: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
V S S D A +EAV WP + V+E +L Q+LV+APVL VPDGSGSFV+Y+ ASKKGLGCVL+Q GKV+AYAS QLK+
Subjt: VKSFWCSRDLAIVEAVVKWPHSTIVAE---------------------KLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKN
Query: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
+E NYPTHDLELAAVV LKIWR+Y+ WLELVKDYD EILYHP K N+VAD LSR+ H++ALIT Q + D E I V VGEV SQLAQL++ PTLR
Subjt: YECNYPTHDLELAAVVSGLKIWRYYI-WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITDQTHVRFDMEYAGITVLVGEVASQLAQLTIHPTLR
Query: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
Q II +Q +D + H VE+ QG++FS+SSD GL+F
Subjt: QHIIDSQKDDRNFSDLFHQVESSQGDEFSLSSDYGLLF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 6.3e-11 | 33.82 | Show/hide |
Query: EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI---------------WLELVK
+KL + P+L VPD + F + AS LG VL Q+G ++Y S L +E NY T + EL A+V K +R+Y+ WL +K
Subjt: EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI---------------WLELVK
Query: D--------------YDVEILYHPSKENVVADGLSR
D +D +I Y KEN VAD LSR
Subjt: D--------------YDVEILYHPSKENVVADGLSR
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| P0CT34 Transposon Tf2-1 polyprotein | 1.3e-08 | 27.71 | Show/hide |
Query: KW-PHSTIVAEKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGK-----VIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI------
KW P T E + Q LVS PVL D S ++ AS +G VL Q + Y S ++ + NY D E+ A++ LK WR+Y+
Subjt: KW-PHSTIVAEKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGK-----VIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI------
Query: ---------------------------WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITD
W ++D++ EI Y P N +AD LSR T + D
Subjt: ---------------------------WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITD
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| P0CT41 Transposon Tf2-12 polyprotein | 1.3e-08 | 27.71 | Show/hide |
Query: KW-PHSTIVAEKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGK-----VIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI------
KW P T E + Q LVS PVL D S ++ AS +G VL Q + Y S ++ + NY D E+ A++ LK WR+Y+
Subjt: KW-PHSTIVAEKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGK-----VIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI------
Query: ---------------------------WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITD
W ++D++ EI Y P N +AD LSR T + D
Subjt: ---------------------------WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITD
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 8.2e-11 | 33.82 | Show/hide |
Query: EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI---------------WLELVK
EKL ++ P+L +PD FV+ AS LG VL QNG I++ S L ++E NY + EL A+V K +R+Y+ WL +K
Subjt: EKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGKVIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI---------------WLELVK
Query: --------------DYDVEILYHPSKENVVADGLSR
+Y +I Y KEN VAD LSR
Subjt: --------------DYDVEILYHPSKENVVADGLSR
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| Q9UR07 Transposon Tf2-11 polyprotein | 1.3e-08 | 27.71 | Show/hide |
Query: KW-PHSTIVAEKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGK-----VIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI------
KW P T E + Q LVS PVL D S ++ AS +G VL Q + Y S ++ + NY D E+ A++ LK WR+Y+
Subjt: KW-PHSTIVAEKLNQRLVSAPVLTVPDGSGSFVVYNYASKKGLGCVLIQNGK-----VIAYASPQLKNYECNYPTHDLELAAVVSGLKIWRYYI------
Query: ---------------------------WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITD
W ++D++ EI Y P N +AD LSR T + D
Subjt: ---------------------------WLELVKDYDVEILYHPSKENVVADGLSRRTTHTSALITD
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