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Lag0022868 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022868
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr7:39802907..39803224
RNA-Seq ExpressionLag0022868
SyntenyLag0022868
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.9e-0943.27Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+S  + +SN+Y GPITRSRSK    E  Q S +A  +L+++ ES K  I   EN ++    S S +  + + PDVMSVMM D  T E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKIS
        +KI+
Subjt:  KKIS

KAA0065961.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.4e-0942.86Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        MT  + SSK + +S++Y  P+T SRSK    +  Q SVIA  +L+++ E +K EI   EN ++  F SPS +    + PDVMSVMM +  T E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISM
        +KI++
Subjt:  KKISM

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.3e-0842.86Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+SK +A+S++Y GPITRSRSK       Q S IA  +L+++ ES K  I   EN ++  + S S +  + + PDVMSVMM D    E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISM
        +KI++
Subjt:  KKISM

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.3e-0842.86Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+SK +A+S++Y GPITRSRSK       Q S IA  +L+++ ES K  I   EN ++  + S S +  + + PDVMSVMM D    E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISM
        +KI++
Subjt:  KKISM

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.3e-0842.86Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+SK +A+S++Y GPITRSRSK       Q S IA  +L+++ ES K  I   EN ++  + S S +  + + PDVMSVMM D    E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISM
        +KI++
Subjt:  KKISM

TrEMBL top hitse value%identityAlignment
A0A5A7VCU1 Ty3-gypsy retrotransposon protein3.1e-0841.35Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+S+ + +S+ Y GPITR+RSK    E  Q S +   +L+++ ES K  I   EN ++    S S +  +   PDVMSVMMTD  T+E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKIS
        +KI+
Subjt:  KKIS

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein2.4e-0840.38Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+SK + +S++Y+GPITRSRSK    E  Q S +A  +L+++ ES K  I   EN ++    S S +  + + PDVMSVMM D  T E  M ++E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKIS
        +K++
Subjt:  KKIS

A0A5A7VJT9 Ty3-gypsy retrotransposon protein1.7e-0942.86Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        MT  + SSK + +S++Y  P+T SRSK    +  Q SVIA  +L+++ E +K EI   EN ++  F SPS +    + PDVMSVMM +  T E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISM
        +KI++
Subjt:  KKISM

A0A5D3BDK1 Ty3-gypsy retrotransposon protein3.1e-0842.31Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+S  + +S++Y GPITR+RSK    E  Q S IA  +L+++ ES K  I   EN ++    S S +  + + PDVMSV+MTD  T+E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKIS
        +KI+
Subjt:  KKIS

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.8e-0943.27Show/hide
Query:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE
        M  ++A+S  + +SN+Y GPITRSRSK    E  Q S +A  +L+++ ES K  I   EN ++    S S +  + + PDVMSVMM D  T E  MAE+E
Subjt:  MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKIS
        +KI+
Subjt:  KKIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTACGAAGAAGCTTCTTCAAAGGTCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCTCCAAGGAAACCCAACATGAAGACAGTCAAACTTC
TGTCATTGCGAACAAGATGCTGAGACGCATGACAGAATCTGCTAAACTTGAAATCGCCGCTACAGAAAATCTGATGTTTTGCAAATTCATCTCTCCTTCTCAGCAACCAA
ACGAAACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGCGAAGAACGGATGGCTGAAGTTGAGAAGAAGATCAGCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTACGAAGAAGCTTCTTCAAAGGTCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCTCCAAGGAAACCCAACATGAAGACAGTCAAACTTC
TGTCATTGCGAACAAGATGCTGAGACGCATGACAGAATCTGCTAAACTTGAAATCGCCGCTACAGAAAATCTGATGTTTTGCAAATTCATCTCTCCTTCTCAGCAACCAA
ACGAAACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGCGAAGAACGGATGGCTGAAGTTGAGAAGAAGATCAGCATGTAA
Protein sequenceShow/hide protein sequence
MTYEEASSKVAASSNSYVGPITRSRSKETQHEDSQTSVIANKMLRRMTESAKLEIAATENLMFCKFISPSQQPNETSSPDVMSVMMTDAGTSEERMAEVEKKISM