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Lag0022879 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022879
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIsopentenyl-diphosphate Delta-isomerase II
Genome locationchr7:40034808..40041135
RNA-Seq ExpressionLag0022879
SyntenyLag0022879
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049895.1 uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa]6.5e-1974.67Show/hide
Query:  ENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESE
        E  LELK  ASQV++G LDMNED+IFVQVFGPEKHG VRGYGVGVTP EL+ SSS VHDLE   NE E RL ESE
Subjt:  ENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESE

KAA0056079.1 bromodomain-containing factor 1-like isoform X2 [Cucumis melo var. makuwa]4.2e-1876.56Show/hide
Query:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ
        +KSYASQV+DGTLDMN+D+IFVQ+ GPEKH  VRGYGVGV  SEL+GSSS VHDLERR NES++
Subjt:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ

XP_008457059.1 PREDICTED: uncharacterized protein LOC103496828 [Cucumis melo]4.9e-1978.12Show/hide
Query:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ
        +KSYASQV+DGTLDMN+D+IFVQ+FGPEKH  VRGYGVGV  SEL+GSSS VHDLERR NES++
Subjt:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ

XP_030970921.1 uncharacterized protein LOC115991358 [Quercus lobata]2.4e-1349.47Show/hide
Query:  KSTENQL-ELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSN-VHDLERRRNESEQRLQESEQ------QRKVEGTI
        K T++ L  L++  +QV +G L +++D++FV+VFGPE+HGRVRGYG GVTP++L+GSSS+ ++DLE+R  ESEQ+  ESEQ      Q+++E  +
Subjt:  KSTENQL-ELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSN-VHDLERRRNESEQRLQESEQ------QRKVEGTI

XP_038904040.1 uncharacterized protein LOC120090445 [Benincasa hispida]6.0e-2569.79Show/hide
Query:  EITREDTEYLAKLWKSTENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESEQQRK
        E+T      LA    + E   +LKSYASQV+DGTLDMNEDE FV+VFGPEKHG V GYGVGVTPSEL+GSSS + D ERR NESEQRLQE EQQRK
Subjt:  EITREDTEYLAKLWKSTENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESEQQRK

TrEMBL top hitse value%identityAlignment
A0A1S3C480 uncharacterized protein LOC1034968282.4e-1978.12Show/hide
Query:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ
        +KSYASQV+DGTLDMN+D+IFVQ+FGPEKH  VRGYGVGV  SEL+GSSS VHDLERR NES++
Subjt:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ

A0A2N9H9X0 Uncharacterized protein1.5e-1351.65Show/hide
Query:  ENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYG-SSSNVHDLERRRNESEQR-----------LQESEQQRK
        E  +  K++ +QV +G+L M EDE+FV+VFGPE HGRVRGYG GVTP+EL+G SSS++ DL+R+  ESE++           L+ESE++RK
Subjt:  ENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYG-SSSNVHDLERRRNESEQR-----------LQESEQQRK

A0A2N9HCP8 Uncharacterized protein2.0e-1349.47Show/hide
Query:  EITREDTEYLAKLWKSTENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESEQQR
        EIT   ++ LA   ++ ++ + L+S  +QV +G+L M+ED++FV+VFGPE+HGRVRGYG GVT ++L+GSSS+      + N+ E+RLQESEQ R
Subjt:  EITREDTEYLAKLWKSTENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESEQQR

A0A5A7U8E9 Uncharacterized protein3.1e-1974.67Show/hide
Query:  ENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESE
        E  LELK  ASQV++G LDMNED+IFVQVFGPEKHG VRGYGVGVTP EL+ SSS VHDLE   NE E RL ESE
Subjt:  ENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESE

A0A5D3BP34 Bromodomain-containing factor 1-like isoform X22.0e-1876.56Show/hide
Query:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ
        +KSYASQV+DGTLDMN+D+IFVQ+ GPEKH  VRGYGVGV  SEL+GSSS VHDLERR NES++
Subjt:  LKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQ

SwissProt top hitse value%identityAlignment
O48964 Isopentenyl-diphosphate Delta-isomerase I2.8e-0982.35Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDEND+VVGH++KYNCHLME IES+N LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF

O48965 Isopentenyl-diphosphate Delta-isomerase II7.4e-1085.29Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDENDHVVGH++KYNCHLME IES N LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF

Q38929 Isopentenyl-diphosphate Delta-isomerase I, chloroplastic8.2e-0979.41Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDEND VVGH++KYNCHLME IE++N LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF

Q39472 Isopentenyl-diphosphate Delta-isomerase I9.7e-1088.24Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDEND VVGHESKYNCHLME IES+N LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF

Q42553 Isopentenyl-diphosphate Delta-isomerase II, chloroplastic1.3e-0985.29Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDE D VVGH+SKYNCHLMENIE+KN LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF

Arabidopsis top hitse value%identityAlignment
AT3G02780.1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 29.0e-1185.29Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDE D VVGH+SKYNCHLMENIE+KN LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF

AT5G16440.1 isopentenyl diphosphate isomerase 15.8e-1079.41Show/hide
Query:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF
        ILVDEND VVGH++KYNCHLME IE++N LHRAF
Subjt:  ILVDENDHVVGHESKYNCHLMENIESKNWLHRAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGACGGCTTCTCGACGTGCTGGAGACAGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGTGATGTGGAGGAGATGTCGGAGTTGGGGCTTCTGGTGGAGGATGC
GGTGAGGGGCACTCCAGCGGGGTGGTTTGCTGGCGGTAGCTTTACGTTTAGGGAGGGCAACCGTGTTGCTCACTGTTTGGCTAGATTGGCAATGGAGGACAGGTGCGACC
GAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGCTGGCTGAGGAAGGAGTGCATGAGTTTCTCGGACTACTTCTTGAGGATTTATATGTTTTAGGTTGGGGT
GGGAGATTGTATAGGCTAGTGGGCTCTGGTTTGAGTCTGGATGCACCTGAGCACCAGGCTAATTTATACATGTTATGTCGTTATTGTTTTGCTCTGTTTGACTTGATTGA
GGCCATGAGCTTAAGCATTGGGCCTTTATCATTGGTCATGAGAAAAGCTTCACCAGTCTTTTGGGTTCACCCATACATTTTAGTGGATGAGAACGATCATGTCGTTGGTC
ATGAATCCAAGTATAACTGTCACTTGATGGAGAATATCGAATCTAAGAACTGGTTGCATCGCGCTTTCAAAGCTTTATCCAATATTCCACAAGAAATTACAAGAGAAGAT
ACAGAATATCTTGCAAAGTTGTGGAAGTCAACTGAAAATCAGTTGGAACTCAAATCATATGCTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGATTTT
TGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTTCTGAGCTATATGGATCATCTTCTAATGTACATGATCTTGAGCGTC
GTCGTAACGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAGTCGAGGGTACTATCGGATACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGACGGCTTCTCGACGTGCTGGAGACAGATTCTATGCGGGTGTTCAAGCTGCTGCAGCGTGATGTGGAGGAGATGTCGGAGTTGGGGCTTCTGGTGGAGGATGC
GGTGAGGGGCACTCCAGCGGGGTGGTTTGCTGGCGGTAGCTTTACGTTTAGGGAGGGCAACCGTGTTGCTCACTGTTTGGCTAGATTGGCAATGGAGGACAGGTGCGACC
GAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGCTGGCTGAGGAAGGAGTGCATGAGTTTCTCGGACTACTTCTTGAGGATTTATATGTTTTAGGTTGGGGT
GGGAGATTGTATAGGCTAGTGGGCTCTGGTTTGAGTCTGGATGCACCTGAGCACCAGGCTAATTTATACATGTTATGTCGTTATTGTTTTGCTCTGTTTGACTTGATTGA
GGCCATGAGCTTAAGCATTGGGCCTTTATCATTGGTCATGAGAAAAGCTTCACCAGTCTTTTGGGTTCACCCATACATTTTAGTGGATGAGAACGATCATGTCGTTGGTC
ATGAATCCAAGTATAACTGTCACTTGATGGAGAATATCGAATCTAAGAACTGGTTGCATCGCGCTTTCAAAGCTTTATCCAATATTCCACAAGAAATTACAAGAGAAGAT
ACAGAATATCTTGCAAAGTTGTGGAAGTCAACTGAAAATCAGTTGGAACTCAAATCATATGCTTCTCAAGTAGTTGATGGTACACTTGACATGAACGAGGATGAGATTTT
TGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGAGTAGGTGTTACTCCTTCTGAGCTATATGGATCATCTTCTAATGTACATGATCTTGAGCGTC
GTCGTAACGAGTCTGAACAACGTCTTCAAGAATCTGAACAACAAAGAAAAGTCGAGGGTACTATCGGATACCAATAA
Protein sequenceShow/hide protein sequence
MWRRLLDVLETDSMRVFKLLQRDVEEMSELGLLVEDAVRGTPAGWFAGGSFTFREGNRVAHCLARLAMEDRCDRVWMEEGPSCVLGLLAEEGVHEFLGLLLEDLYVLGWG
GRLYRLVGSGLSLDAPEHQANLYMLCRYCFALFDLIEAMSLSIGPLSLVMRKASPVFWVHPYILVDENDHVVGHESKYNCHLMENIESKNWLHRAFKALSNIPQEITRED
TEYLAKLWKSTENQLELKSYASQVVDGTLDMNEDEIFVQVFGPEKHGRVRGYGVGVTPSELYGSSSNVHDLERRRNESEQRLQESEQQRKVEGTIGYQ