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Lag0022940 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022940
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr7:41342443..41342865
RNA-Seq ExpressionLag0022940
SyntenyLag0022940
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]2.2e-3254.55Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW  +   EDH +EPI WT  KDLLYDYYF   +KD+KE EFLHL Q  L V Q+E KF + S F  DL+ T  RK+KRF+RGLWK I+G   L+ PTT+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A++  LVM K+V +KAQ   + G SSG+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]9.4e-3154.55Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW SI A EDH +  I W +FKDLLYDYY+ + VKD KE EFLHL+QG LSV Q+E KF +LS F  +L+  +  K+KRF++GL K IRG   L+ P ++
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A+R  L+M K+VS KA S  + GSSSG+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]5.0e-3253.03Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW S+ A EDH + P+ W +FKDLLYDYY+ + VKD KE EFLHL QG L+V Q+E KF +LS F  +L+ T   K+KRF++GL K IRG   L+ P T+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A+R  L+M K+VS + Q  ++ GSSSG+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.1e-3154.01Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW S+ A ED+ + PI W +FK+LLYDYY+ + VKD KE EFLHL+QG LSV Q+E KF +LS F  +L+ T   K+KRF++GL K IRG   L+ PTT+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKRNCESS
        A+A+R  LVM K+VS KA    + GSSSG+KR   S+
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKRNCESS

XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]7.2e-3150.76Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW S+ A EDH + P+ W +FK+LLYD+Y+ + V+D KE EFLHL+QG L+V Q+E KF +LS F  +L+ T   K+KRF++GL K IRGS  L+ P T+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A+R  L+M K+VS + Q  ++ GSS G+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196031.1e-3254.55Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW  +   EDH +EPI WT  KDLLYDYYF   +KD+KE EFLHL Q  L V Q+E KF + S F  DL+ T  RK+KRF+RGLWK I+G   L+ PTT+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A++  LVM K+V +KAQ   + G SSG+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

A0A6J1DL73 uncharacterized protein LOC1110221444.6e-3154.55Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW SI A EDH +  I W +FKDLLYDYY+ + VKD KE EFLHL+QG LSV Q+E KF +LS F  +L+  +  K+KRF++GL K IRG   L+ P ++
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A+R  L+M K+VS KA S  + GSSSG+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

A0A6J1DQJ4 uncharacterized protein LOC1110228852.4e-3253.03Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW S+ A EDH + P+ W +FKDLLYDYY+ + VKD KE EFLHL QG L+V Q+E KF +LS F  +L+ T   K+KRF++GL K IRG   L+ P T+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A+R  L+M K+VS + Q  ++ GSSSG+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

A0A6J1DUM2 uncharacterized protein LOC1110232475.4e-3254.01Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW S+ A ED+ + PI W +FK+LLYDYY+ + VKD KE EFLHL+QG LSV Q+E KF +LS F  +L+ T   K+KRF++GL K IRG   L+ PTT+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKRNCESS
        A+A+R  LVM K+VS KA    + GSSSG+KR   S+
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKRNCESS

A0A6J1DVA0 uncharacterized protein LOC1110234243.5e-3150.76Show/hide
Query:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF
        WW S+ A EDH + P+ W +FK+LLYD+Y+ + V+D KE EFLHL+QG L+V Q+E KF +LS F  +L+ T   K+KRF++GL K IRGS  L+ P T+
Subjt:  WWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTF

Query:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR
        A+A+R  L+M K+VS + Q  ++ GSS G+KR
Subjt:  AKALRDDLVMGKNVSKKAQSHLQNGSSSGIKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTGGAAGTCCATTGAAGCATATGAGGACCATGTGAGTGAGCCCATCATATGGACCAAGTTTAAGGATCTCCTTTATGACTATTATTTTTCCGACATGGTGAAGGA
CGACAAAGAGACTGAGTTTCTCCATTTGATACAAGGTAACCTGTCTGTGGTTCAGTTCGAGGGAAAGTTCATGAAGCTATCTTGTTTCACTCCAGATCTAGTTGGTACAT
CAAAGCGGAAGGTAAAAAGGTTCATAAGAGGCCTATGGAAGGAAATTAGAGGTTCGGAAGTTTTGAAGGAACCCACCACATTTGCTAAAGCACTTAGAGACGACCTTGTG
ATGGGCAAGAATGTTTCCAAAAAGGCACAATCTCACCTACAGAATGGTTCTTCCTCTGGGATTAAGCGAAACTGTGAAAGTTCTCCCCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTGGAAGTCCATTGAAGCATATGAGGACCATGTGAGTGAGCCCATCATATGGACCAAGTTTAAGGATCTCCTTTATGACTATTATTTTTCCGACATGGTGAAGGA
CGACAAAGAGACTGAGTTTCTCCATTTGATACAAGGTAACCTGTCTGTGGTTCAGTTCGAGGGAAAGTTCATGAAGCTATCTTGTTTCACTCCAGATCTAGTTGGTACAT
CAAAGCGGAAGGTAAAAAGGTTCATAAGAGGCCTATGGAAGGAAATTAGAGGTTCGGAAGTTTTGAAGGAACCCACCACATTTGCTAAAGCACTTAGAGACGACCTTGTG
ATGGGCAAGAATGTTTCCAAAAAGGCACAATCTCACCTACAGAATGGTTCTTCCTCTGGGATTAAGCGAAACTGTGAAAGTTCTCCCCCTTAG
Protein sequenceShow/hide protein sequence
MWWKSIEAYEDHVSEPIIWTKFKDLLYDYYFSDMVKDDKETEFLHLIQGNLSVVQFEGKFMKLSCFTPDLVGTSKRKVKRFIRGLWKEIRGSEVLKEPTTFAKALRDDLV
MGKNVSKKAQSHLQNGSSSGIKRNCESSPP