; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0022944 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0022944
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr7:41419085..41421132
RNA-Seq ExpressionLag0022944
SyntenyLag0022944
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-2167.02Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-2167.02Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]7.2e-2167.02Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-2152.63Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT
        +SMA  +EEN+C  ST TR SAF+RLS+STSKK R ST VFDRLK+TNDQ +R+M  L+ K F E N D K+H+ +PSRMKRK SV IN E         
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT

Query:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKSSKV
                       EPKLH APSP E KSS +
Subjt:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKSSKV

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]1.4e-2153.85Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS +PSRMKRK SV INTE         
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT

Query:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKS
                       +PKLH APSP E KS
Subjt:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKS

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.0e-2167.02Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein3.5e-2167.02Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

A0A5A7UM99 Ty3-gypsy retrotransposon protein9.1e-2252.63Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT
        +SMA  +EEN+C  ST TR SAF+RLS+STSKK R ST VFDRLK+TNDQ +R+M  L+ K F E N D K+H+ +PSRMKRK SV IN E         
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT

Query:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKSSKV
                       EPKLH APSP E KSS +
Subjt:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKSSKV

A0A5A7VHY3 Uncharacterized protein7.0e-2253.85Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R++ +L+ KLF E N D K+HS +PSRMKRK SV INTE         
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKT

Query:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKS
                       +PKLH APSP E KS
Subjt:  ITKIRAFKCKSSLSQEPKLHDAPSPHEFKS

A0A5D3BBF9 Gag protease polyprotein3.5e-2167.02Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSRMKRK SV INTEGSL
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGATCTGATCAAGACCATAACAAAGATAAGAGCTTTTAAATGTAAA
AGCTCCTTGTCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGTTTAAAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCAAGTTTGAAGGTTC
TCCGCTGTGCAGTTCCTTCTTTTTTTCTCCATTTGAAGGTTCTCTCCTTCGAGTTTCCTTCCTCAAGTTTTTCGAAGGTTCTCACCGCTTCGCTGCAGTTCCTTCTTCCA
AGGTTTCACGGCTTCGCTACAGTTCCTTCTCCAATTCGAAGGTTCTCAGCCGTGCAGTTCTTCTCAGTTCAAGGTTCCCGTTCCTTCCTCCAAGTTCGAAGGTTCTCATG
CCGGCTTCCTGCTCAGTTCGAGTTCAGGTTCCCTTTCCTTCCCCAATTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTC
GTCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCAAGTTCGAAGTT
CTCACGTGCTTCGCTGCAGTTTTCTCAAGTTAAGTTCCTGCTTCCTTCTCAAGTTCGAGTTCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGTTCTCACGTG
CTTCGCTGCGTTCCTTCCTCCAATTCGAAGTTCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGTTGCAGTTCCTTCTCTTCAAGGT
CGAAGGTTCTCACGCGTTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCACTTCAGTTCCTTCTTCCAAATTCGAAGGTTCTCACGTGCTTCGCTGC
AGTTCCTTCCTCCAAGTTTGAAGGTTCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCAAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTC
ACGTCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCTAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTTGAAGGTTCTCACGCGTTGCGTTGCAGTTCTTT
CTCCCCAAGTTCGAAGGTTCACGCACTTCGCTTCAATTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGT
GCTCCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTTCGCTACAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGTGTTTCACTGCAGTTCCTTCCTCC
AAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGATCTGATCAAGACCATAACAAAGATAAGAGCTTTTAAATGTAAA
AGCTCCTTGTCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGTTTAAAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCAAGTTTGAAGGTTC
TCCGCTGTGCAGTTCCTTCTTTTTTTCTCCATTTGAAGGTTCTCTCCTTCGAGTTTCCTTCCTCAAGTTTTTCGAAGGTTCTCACCGCTTCGCTGCAGTTCCTTCTTCCA
AGGTTTCACGGCTTCGCTACAGTTCCTTCTCCAATTCGAAGGTTCTCAGCCGTGCAGTTCTTCTCAGTTCAAGGTTCCCGTTCCTTCCTCCAAGTTCGAAGGTTCTCATG
CCGGCTTCCTGCTCAGTTCGAGTTCAGGTTCCCTTTCCTTCCCCAATTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTC
GTCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCAAGTTCGAAGTT
CTCACGTGCTTCGCTGCAGTTTTCTCAAGTTAAGTTCCTGCTTCCTTCTCAAGTTCGAGTTCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGTTCTCACGTG
CTTCGCTGCGTTCCTTCCTCCAATTCGAAGTTCTCACGCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGTTGCAGTTCCTTCTCTTCAAGGT
CGAAGGTTCTCACGCGTTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCACTTCAGTTCCTTCTTCCAAATTCGAAGGTTCTCACGTGCTTCGCTGC
AGTTCCTTCCTCCAAGTTTGAAGGTTCTCCGCTGCTGCAGTTCATTCCTCCAAGTTCAAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTC
ACGTCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCTAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCTCCAAGGTTGAAGGTTCTCACGCGTTGCGTTGCAGTTCTTT
CTCCCCAAGTTCGAAGGTTCACGCACTTCGCTTCAATTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGT
GCTCCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGTCGCTTCGCTACAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGTGTTTCACTGCAGTTCCTTCCTCC
AAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCTAA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKDLIKTITKIRAFKCK
SSLSQEPKLHDAPSPHEFKSSKVLTRFVAVPSKFEGSPLCSSFFFSPFEGSLLRVSFLKFFEGSHRFAAVPSSKVSRLRYSSFSNSKVLSRAVLLSSRFPFLPPSSKVLM
PASCSVRVQVPFPSPIRRFSLASLQFLPQVRRFSRASSVPSSKFEGSHALRCSSFSKFEGSHALRCSSFQVRSSHVLRCSFLKLSSCFLLKFEFSRASLRSFLQVRSSHV
LRCVPSSNSKFSRASLRSFLQVRRFSRALLQFLLFKVEGSHALRCSSFSPSSKVHALHFSSFFQIRRFSRASLQFLPPSLKVLRCCSSFLQVQRFSRAPLQFLPPSLKVL
TSLRCSSFLQVLRFSRASLQFLLSKVEGSHALRCSSFSPSSKVHALRFNSFSQIRRFSRASLQFLPPSLKVLTCSAAVPSSKFEGSHVASLQFFPPSSKVLTCFTAVPSS
KFEGSHALRCSSFL