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Lag0023003 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023003
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationchr7:42548979..42549353
RNA-Seq ExpressionLag0023003
SyntenyLag0023003
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]1.7e-0741.3Show/hide
Query:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG
        F+   I    W QFCA PE      VREFYANL D  E  V VRGV V WS EA+N +F L D P    +E +   +   L   +  V + G
Subjt:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]2.9e-0737.96Show/hide
Query:  ERGF-GNN-----LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAA
        E+GF G+N      P F+   I    W  FCA PE + +  VREFYAN+ + ++  V VRGV V  S EA+N ++ L D P    +E V A +  +L+  
Subjt:  ERGF-GNN-----LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAA

Query:  VREVGIEG
        +  V I G
Subjt:  VREVGIEG

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]4.5e-0853.97Show/hide
Query:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD
        F+   I    W QFCA PE      VREFYANL D EE  V VRGV V WS EA+N +F L D
Subjt:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD

PON85987.1 hypothetical protein TorRG33x02_181920, partial [Trema orientale]7.6e-0842.39Show/hide
Query:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG
        F+   I    W QFCA PE      VREFYANL D EE  V VRGV V W+ EA+N +F L D P    +E V   +  +L   +  V   G
Subjt:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG

PON90635.1 hypothetical protein TorRG33x02_134920 [Trema orientale]8.4e-0745.05Show/hide
Query:  ERGFGNN------LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD--FPHAVFNEMV
        E+GF  N       P F+   I    W  FCA  E      VREFYANL D EE  V V+GV V WS EA+N LF L D    H+ F E V
Subjt:  ERGFGNN------LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD--FPHAVFNEMV

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)8.2e-0841.3Show/hide
Query:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG
        F+   I    W QFCA PE      VREFYANL D  E  V VRGV V WS EA+N +F L D P    +E +   +   L   +  V + G
Subjt:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG

A0A2P5B0K0 Uncharacterized protein1.4e-0737.96Show/hide
Query:  ERGF-GNN-----LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAA
        E+GF G+N      P F+   I    W  FCA PE + +  VREFYAN+ + ++  V VRGV V  S EA+N ++ L D P    +E V A +  +L+  
Subjt:  ERGF-GNN-----LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAA

Query:  VREVGIEG
        +  V I G
Subjt:  VREVGIEG

A0A2P5BCG4 Uncharacterized protein (Fragment)2.2e-0853.97Show/hide
Query:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD
        F+   I    W QFCA PE      VREFYANL D EE  V VRGV V WS EA+N +F L D
Subjt:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD

A0A2P5EK98 Uncharacterized protein (Fragment)3.7e-0842.39Show/hide
Query:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG
        F+   I    W QFCA PE      VREFYANL D EE  V VRGV V W+ EA+N +F L D P    +E V   +  +L   +  V   G
Subjt:  FLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG

A0A2P5EYL5 Uncharacterized protein4.1e-0745.05Show/hide
Query:  ERGFGNN------LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD--FPHAVFNEMV
        E+GF  N       P F+   I    W  FCA  E      VREFYANL D EE  V V+GV V WS EA+N LF L D    H+ F E V
Subjt:  ERGFGNN------LPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQD--FPHAVFNEMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAACGGGACTTCCTGTTTGAACGGGGATTTGGCAATAATTTGCCACGGTTCTTGAGGACTGGAATAGAGAACCTTGGCTGGAGCCAATTTTGTGCGAAACCAGA
GCCTGTTAATTCCAACTTTGTTCGGGAATTTTACGCAAATCTTGACGATAAGGAAGAATTGCAGGTTGTAGTTCGAGGAGTCCCCGTGGATTGGAGCCCAGAAGCTGTTA
ATGAATTGTTCGATCTCCAGGATTTTCCACATGCAGTCTTTAATGAGATGGTGGTTGCACCATCTAACGACCAGCTAAGTGCGGCTGTCCGAGAGGTTGGCATTGAGGGG
GTGATAGCGAGCAGAAATGTCGCTATTTTAGTCTCAATTTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAACGGGACTTCCTGTTTGAACGGGGATTTGGCAATAATTTGCCACGGTTCTTGAGGACTGGAATAGAGAACCTTGGCTGGAGCCAATTTTGTGCGAAACCAGA
GCCTGTTAATTCCAACTTTGTTCGGGAATTTTACGCAAATCTTGACGATAAGGAAGAATTGCAGGTTGTAGTTCGAGGAGTCCCCGTGGATTGGAGCCCAGAAGCTGTTA
ATGAATTGTTCGATCTCCAGGATTTTCCACATGCAGTCTTTAATGAGATGGTGGTTGCACCATCTAACGACCAGCTAAGTGCGGCTGTCCGAGAGGTTGGCATTGAGGGG
GTGATAGCGAGCAGAAATGTCGCTATTTTAGTCTCAATTTATTAA
Protein sequenceShow/hide protein sequence
MLKRDFLFERGFGNNLPRFLRTGIENLGWSQFCAKPEPVNSNFVREFYANLDDKEELQVVVRGVPVDWSPEAVNELFDLQDFPHAVFNEMVVAPSNDQLSAAVREVGIEG
VIASRNVAILVSIY