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Lag0023007 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023007
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptiontRNA-specific adenosine deaminase 1 isoform X1
Genome locationchr7:42664873..42667224
RNA-Seq ExpressionLag0023007
SyntenyLag0023007
Gene Ontology termsGO:0006382 - adenosine to inosine editing (biological process)
GO:0006396 - RNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0003726 - double-stranded RNA adenosine deaminase activity (molecular function)
GO:0008251 - tRNA-specific adenosine deaminase activity (molecular function)
InterPro domainsIPR002466 - Adenosine deaminase/editase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156098.1 tRNA-specific adenosine deaminase 1 isoform X1 [Momordica charantia]1.5e-2065.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI +GLSPHSAK+CI E+H+KRAV DRVQ FS++LM  FK+NQ +     A IPPKEFQH ES   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
XP_022156100.1 tRNA-specific adenosine deaminase 1 isoform X3 [Momordica charantia]1.5e-2065.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI +GLSPHSAK+CI E+H+KRAV DRVQ FS++LM  FK+NQ +     A IPPKEFQH ES   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
XP_022156101.1 tRNA-specific adenosine deaminase 1 isoform X4 [Momordica charantia]1.5e-2065.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI +GLSPHSAK+CI E+H+KRAV DRVQ FS++LM  FK+NQ +     A IPPKEFQH ES   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
XP_038888962.1 tRNA-specific adenosine deaminase TAD1 isoform X1 [Benincasa hispida]9.7e-2065.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI VGLSPHSAKNC+ E+ +KRAV DRVQ FS +LM   K+NQ +     A IPPKEFQH ES  +TITC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
XP_038888964.1 tRNA-specific adenosine deaminase TAD1 isoform X3 [Benincasa hispida]9.7e-2065.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI VGLSPHSAKNC+ E+ +KRAV DRVQ FS +LM   K+NQ +     A IPPKEFQH ES  +TITC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
TrEMBL top hitse value%identityAlignment
A0A1S4E240 tRNA-specific adenosine deaminase 1 isoform X31.4e-1965.48Show/hide
Query:  GALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        GALL YFLQP+++SSI VGLSPHSAKNCI E  +K AV DRVQ FSN+LM   K+NQ +     A IPPKEFQH ES  +TITC
Subjt:  GALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
A0A5D3BVY3 tRNA-specific adenosine deaminase 1 isoform X41.4e-1965.48Show/hide
Query:  GALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        GALL YFLQP+++SSI VGLSPHSAKNCI E  +K AV DRVQ FSN+LM   K+NQ +     A IPPKEFQH ES  +TITC
Subjt:  GALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
A0A6J1DPC6 tRNA-specific adenosine deaminase 1 isoform X37.2e-2165.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI +GLSPHSAK+CI E+H+KRAV DRVQ FS++LM  FK+NQ +     A IPPKEFQH ES   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
A0A6J1DPP1 tRNA-specific adenosine deaminase 1 isoform X17.2e-2165.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI +GLSPHSAK+CI E+H+KRAV DRVQ FS++LM  FK+NQ +     A IPPKEFQH ES   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
A0A6J1DTU3 tRNA-specific adenosine deaminase 1 isoform X47.2e-2165.12Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL YFLQP+Y+SSI +GLSPHSAK+CI E+H+KRAV DRVQ FS++LM  FK+NQ +     A IPPKEFQH ES   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
SwissProt top hitse value%identityAlignment
F4HU58 tRNA-specific adenosine deaminase TAD15.9e-1243.02Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL   LQP+YIS+I VG S HS  N     H++R++ +R+   S++L+  F+LN+ +   + A +PP EFQH E+   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
Arabidopsis top hitse value%identityAlignment
AT1G01760.1 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases4.2e-1343.02Show/hide
Query:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC
        V GALL   LQP+YIS+I VG S HS  N     H++R++ +R+   S++L+  F+LN+ +   + A +PP EFQH E+   T+TC
Subjt:  VLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCCCCTCATCTTGTATTAGGAGCTCTTCTCTTGTACTTTCTTCAGCCTATTTATATTTCCTCTATAGTAGTTGGATTGTCCCCTCATAGTGCCAAAAATTGTAT
ACCTGAGCAACACGTGAAAAGAGCAGTATCTGATCGAGTACAACAATTTTCAAATGATCTAATGGCTCTTTTTAAGTTGAATCAGTGGATTTGCCGCCACTATTTTGCAC
AAATACCACCAAAGGAGTTTCAACACTTGGAGTCTGATTGGGACACTATAACTTGTGATGAGGATTACTACAAACCGGGTGATGCTGAGGAGGAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCCCCTCATCTTGTATTAGGAGCTCTTCTCTTGTACTTTCTTCAGCCTATTTATATTTCCTCTATAGTAGTTGGATTGTCCCCTCATAGTGCCAAAAATTGTAT
ACCTGAGCAACACGTGAAAAGAGCAGTATCTGATCGAGTACAACAATTTTCAAATGATCTAATGGCTCTTTTTAAGTTGAATCAGTGGATTTGCCGCCACTATTTTGCAC
AAATACCACCAAAGGAGTTTCAACACTTGGAGTCTGATTGGGACACTATAACTTGTGATGAGGATTACTACAAACCGGGTGATGCTGAGGAGGAGGTCTGA
Protein sequenceShow/hide protein sequence
MVSPHLVLGALLLYFLQPIYISSIVVGLSPHSAKNCIPEQHVKRAVSDRVQQFSNDLMALFKLNQWICRHYFAQIPPKEFQHLESDWDTITCDEDYYKPGDAEEEV