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Lag0023023 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023023
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr7:42996874..42997596
RNA-Seq ExpressionLag0023023
SyntenyLag0023023
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015380691.1 uncharacterized protein LOC107174364 [Citrus sinensis]4.8e-1033.85Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYEE---------PMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQAT
        +P+ CM  E+ + LG ++G VE++             GE   E+           P+ + + +K +   ++  P+ YE+LPD C+ CGIIGH Y+EC A 
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYEE---------PMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQAT

Query:  RGGGEGEDRPYGEWMRAIPSRGSGRKGRGR
          G + E  PYG WM+AI   G  RK R +
Subjt:  RGGGEGEDRPYGEWMRAIPSRGSGRKGRGR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]8.5e-1536.91Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLA-YNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYREC-QATRGGGEGE
        +P  C++ EMA +LGA +G VE++   G  G    +       +  +P+ RG+K+K  +GK++WCP++YEKLPD C++CG IGHS REC Q ++      
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLA-YNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYREC-QATRGGGEGE

Query:  DRPYGEWMRAIPSRGS------------GRKGRGRKREECPMGFGGQGG
           YG+W+RA   + S            GR GRG +        GG+GG
Subjt:  DRPYGEWMRAIPSRGS------------GRKGRGRKREECPMGFGGQGG

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]1.5e-1140.82Show/hide
Query:  CMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYE---------------EPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRE
        CMT +MAK LGA +G VE              E +G S Y+               +P+ RG+K+KT +GK++WCP++YE+LPD C+ CG +GHS RE
Subjt:  CMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYE---------------EPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRE

XP_023913699.1 uncharacterized protein LOC112025279 [Quercus suber]6.3e-1036.28Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRGGGEG
        +P N MT E+A+ L   VG+V++      M G ++   +   +   P+ RG +I   EG+E W   +YE+LP++C  CG + HS R+C     + G  + 
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRGGGEG

Query:  EDRPYGEWMRAIP
        EDR YG W+RA+P
Subjt:  EDRPYGEWMRAIP

XP_042952130.1 uncharacterized protein At4g02000-like [Carya illinoinensis]1.3e-1037.5Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGL-AYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQATRGGGE--G
        MP++CMT +  + +G+ VG VEK+ V+    G   Y   +   +  +PM RG  +  K G+++W P  YEK+P +CF CG I H    C+    GGE  G
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGL-AYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQATRGGGE--G

Query:  EDRPYGEWMRAI
        ++  YG+W+RA+
Subjt:  EDRPYGEWMRAI

TrEMBL top hitse value%identityAlignment
A0A2N9GDF4 Uncharacterized protein2.8e-1136.97Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKL----RVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRG
        +PV  M  E A  LG  +GVVEK+      RGR G +         +  +P+ RG K +   GKE W   +YE+LP+ C+ CG++ H  REC+    ++G
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKL----RVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRG

Query:  GGEGEDRPYGEWMRAIPSR
            ED+ YG W+RA   R
Subjt:  GGEGEDRPYGEWMRAIPSR

A0A2N9HFR8 Uncharacterized protein2.8e-1136.97Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKL----RVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRG
        +PV  M  E A  LG  +GVVEK+      RGR G +         +  +P+ RG K +   GKE W   +YE+LP+ C+ CG++ H  REC+    ++G
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKL----RVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRG

Query:  GGEGEDRPYGEWMRAIPSR
            ED+ YG W+RA   R
Subjt:  GGEGEDRPYGEWMRAIPSR

A0A2N9IXX1 Reverse transcriptase domain-containing protein1.6e-1136.13Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKL----RVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRG
        +PV  M+ E A  LG  VGVVE++      RGR G +         +  +P+ RG K     GKE+W P +YE+LP+ C+ CG++ H  R+C+    ++G
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKL----RVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQ---ATRG

Query:  GGEGEDRPYGEWMRAIPSR
            E++ YG W+RA+  R
Subjt:  GGEGEDRPYGEWMRAIPSR

A0A6J1D765 uncharacterized protein LOC1110179024.1e-1536.91Show/hide
Query:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLA-YNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYREC-QATRGGGEGE
        +P  C++ EMA +LGA +G VE++   G  G    +       +  +P+ RG+K+K  +GK++WCP++YEKLPD C++CG IGHS REC Q ++      
Subjt:  MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLA-YNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYREC-QATRGGGEGE

Query:  DRPYGEWMRAIPSRGS------------GRKGRGRKREECPMGFGGQGG
           YG+W+RA   + S            GR GRG +        GG+GG
Subjt:  DRPYGEWMRAIPSRGS------------GRKGRGRKREECPMGFGGQGG

A0A6J1DVS4 uncharacterized protein LOC1110235557.3e-1240.82Show/hide
Query:  CMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYE---------------EPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRE
        CMT +MAK LGA +G VE              E +G S Y+               +P+ RG+K+KT +GK++WCP++YE+LPD C+ CG +GHS RE
Subjt:  CMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYE---------------EPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTGAATTGTATGACAGTTGAGATGGCAAAAGTGTTGGGAGCGGTGGTGGGGGTGGTTGAGAAGTTGAGGGTGAGGGGAAGAATGGGAGGACTGGCCTATAATGA
GGGTGAGGGTAGTAGTGAATATGAAGAACCCATGCTGAGAGGGGTGAAGATAAAAACAAAAGAGGGAAAAGAGGTTTGGTGCCCAATTCAGTATGAAAAATTGCCGGATA
TGTGCTTCAAATGTGGGATCATTGGGCACTCTTATCGTGAGTGTCAAGCCACGCGGGGGGGGGGAGAGGGGGAGGATCGACCTTATGGGGAGTGGATGAGGGCAATCCCG
AGTAGGGGGAGTGGGAGGAAGGGCAGAGGAAGGAAGAGGGAAGAGTGTCCAATGGGGTTCGGTGGGCAGGGTGGTGGGAAAAGTGGGGGGACGGAGGGAGGACTGGGTGA
GGGGAGTGGTCTGGGGGTAAGGAAAGGGGTCAAGGTGGGAGAGGGCAAAAGGGAAGGAGGTGATGGGGGATCAAGGTGTGGAATTGTCGGAGAGGGGAGGGGGTACCTTT
GGGAAGGAGGAGTGCATCTTACCCATCTGTCTGTTGGGGATGGGGTGAGGAAGTGGAAAAGAGGGAGAGGGAGGTGGTGGATGAAATGGGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGTGAATTGTATGACAGTTGAGATGGCAAAAGTGTTGGGAGCGGTGGTGGGGGTGGTTGAGAAGTTGAGGGTGAGGGGAAGAATGGGAGGACTGGCCTATAATGA
GGGTGAGGGTAGTAGTGAATATGAAGAACCCATGCTGAGAGGGGTGAAGATAAAAACAAAAGAGGGAAAAGAGGTTTGGTGCCCAATTCAGTATGAAAAATTGCCGGATA
TGTGCTTCAAATGTGGGATCATTGGGCACTCTTATCGTGAGTGTCAAGCCACGCGGGGGGGGGGAGAGGGGGAGGATCGACCTTATGGGGAGTGGATGAGGGCAATCCCG
AGTAGGGGGAGTGGGAGGAAGGGCAGAGGAAGGAAGAGGGAAGAGTGTCCAATGGGGTTCGGTGGGCAGGGTGGTGGGAAAAGTGGGGGGACGGAGGGAGGACTGGGTGA
GGGGAGTGGTCTGGGGGTAAGGAAAGGGGTCAAGGTGGGAGAGGGCAAAAGGGAAGGAGGTGATGGGGGATCAAGGTGTGGAATTGTCGGAGAGGGGAGGGGGTACCTTT
GGGAAGGAGGAGTGCATCTTACCCATCTGTCTGTTGGGGATGGGGTGAGGAAGTGGAAAAGAGGGAGAGGGAGGTGGTGGATGAAATGGGGCTGA
Protein sequenceShow/hide protein sequence
MPVNCMTVEMAKVLGAVVGVVEKLRVRGRMGGLAYNEGEGSSEYEEPMLRGVKIKTKEGKEVWCPIQYEKLPDMCFKCGIIGHSYRECQATRGGGEGEDRPYGEWMRAIP
SRGSGRKGRGRKREECPMGFGGQGGGKSGGTEGGLGEGSGLGVRKGVKVGEGKREGGDGGSRCGIVGEGRGYLWEGGVHLTHLSVGDGVRKWKRGRGRWWMKWG