| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.3e-149 | 39.61 | Show/hide |
Query: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
M S S+ E SS +I GNKI+ +KL++D FLLWK QILT L + L++ L+ +SE PSKYL + +SS PN AY W RQD LI +
Subjt: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
Query: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
WLLGSMS +L++ML C++A+E+W LQ FSSR +A+ M K+KL +KKG++ L++YFLK+ VDAL + + +S +DH+L ILAGLG++Y S ++V
Subjt: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
Query: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
I+ + ++P +Q+V SLL TQES+ + + ++PSVN+ TQT K Q + S N++ G G +NR N NKPQCQ+C + G++
Subjt: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
Query: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
RC++R+ P +NS+G +S + N P M+A+V DLN D++WYPDSGA+NH+T+ LSNL+IG+EY G N++ NG+
Subjt: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
Query: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
G L DGLY+F +E +H TK
Subjt: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
Query: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
I NS+ A SH L+ P +L DLW ++R+T
Subjt: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
Query: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
WIYFL SK++AF F+ FKT VEK LG+SI LQTD G+EF+PF PFL HGIEHR TCPYTSKQN IVERKHR I+EMGLTLLS A+L L FWD+AFST
Subjt: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
Query: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
SVYLINRLPT V+ +SPLEKL KP++ L+ FGC CYPYLRPY HK+ RS PC FLGYS+ HKGYKCLAS G+++ISR+VLFDE FP + F
Subjt: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
Query: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
++ S P V P + +P+ +N N D HT +D
Subjt: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
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| RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.7e-117 | 33.67 | Show/hide |
Query: IINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRI
+I+P +++ TM+L++DNFL+WK QI +RG+GL+ L ++P K +T+ +PN + + RQD L+I+WLL S+ ++ L +++ C +A EVW
Subjt: IINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRI
Query: LQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIAR
+ F+S++ A++M KS++++LKK L + DY K+KN D L AG KIS DH+L I+ GLG EY+S + VI+ K +P LQ V S L E RIA
Subjt: LQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIAR
Query: NLSINPDGSIPSVNLTTQTGPKQQQASSG-DSNNRKNSNGKGNN--NRRSWNNNN-----------KPQCQLCKRFGHTVQRCYYRFERWFQGPNTNSNG
+S N D S+ + + GP S+G S+ +N N G N R S+ +N KPQCQLC +FGHTV RC+YR++ F G N +NG
Subjt: NLSINPDGSIPSVNLTTQTGPKQQQASSG-DSNNRKNSNGKGNN--NRRSWNNNN-----------KPQCQLCKRFGHTVQRCYYRFERWFQGPNTNSNG
Query: QQSSSVLGPP--------------------PSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA---------
+ VLG + +N M A+V + ++ W+PDSGA+NHVT+DL NL G EY G++++++GNG
Subjt: QQSSSVLGPP--------------------PSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA---------
Query: --------------------------------------------------------------GTLVDGLYQFLLEK------------------------
G L GLYQF L K
Subjt: --------------------------------------------------------------GTLVDGLYQFLLEK------------------------
Query: -AHPDTTKISNSTSAEH-------------TSHVLSTEAQPSKLSCTT----------------------------------VFDLW-------------
H D + T++ S +++ +K+ +T V DLW
Subjt: -AHPDTTKISNSTSAEH-------------TSHVLSTEAQPSKLSCTT----------------------------------VFDLW-------------
Query: -------HNRFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHAS
++R+TW+YFL +K++ + F +FK E G + QTD G EFR + + +GI HR +CP+TSKQNGI+ERKHR IVE+GLTLL+ AS
Subjt: -------HNRFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHAS
Query: LSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFD
L L++W DAFST+V+LINRLPT V+ Q P E L KP+Y LK FGCLC+P+LRPYN HK++ RS PC FLGYSS HKGYKCL G+++ISR+V+FD
Subjt: LSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFD
Query: ETKFPSSKFLD------PQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPA------MTLNNHDSDHT
ET+FP + L S V P +P++ + S+S ++S PT + + ++ + + L+N DS T
Subjt: ETKFPSSKFLD------PQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPA------MTLNNHDSDHT
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| RVW80632.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.7e-117 | 34.84 | Show/hide |
Query: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
KLD NFL+W+ QILTTLRGH L+H L E S +PS++L++ D ++ N + W +QD LI++WLL S++++LL+ M+ C+T+ +VW+ L+ F+++
Subjt: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
Query: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
A++ K++L KKG+L + DY LK++N+VD L G KIS +DH+ I GL +Y++ + + + + ++++ LL QESRI +N+ I D S
Subjt: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
Query: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
PS+ T + G +AS+ +SN R G+G + R SW NNKPQCQLC R GH V +CYYRF++ F GP+ N Q
Subjt: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
Query: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAG-------------TLVDGLYQFLLEKAH-PD
+ +NF + ++ +DN+WYPDSGA++H+T +L+NL +++ + V VGNG G + + L + H P+
Subjt: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAG-------------TLVDGLYQFLLEKAH-PD
Query: TTK--------------------------------------------ISNSTSAE---HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
TK + ++T + H S ++ A PSK S T+ F LWHN
Subjt: TTK--------------------------------------------ISNSTSAE---HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
Query: -------------------------------------------------------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEK
RFTWIY L K+EAFQ+F FK+ VE
Subjt: -------------------------------------------------------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEK
Query: LLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLG
LG I +Q+D G E+R FT +L ++GI HR +CPYT +QNG+ ERKHR IVE G+ LL+ ASL ++WD+AF TSVYLINRLPT V+ SPLE L
Subjt: LLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLG
Query: FKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTA
KP Y LK FGC+CYP LRP+NHHK++ RS+PC FLGYS HKGYKCL+ +G + ISR+V+FDE FP F QS + S ST+
Subjt: FKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTA
Query: VSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
+ C T ++P M L + S TS +PS
Subjt: VSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
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| RVX03305.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.8e-122 | 36.08 | Show/hide |
Query: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
KLD NFL+W+ QILTTLRGH L+H L E S +PS++L++ D ++ N + W +QD LI++WLL S++++LL+ M+ C+T+ +VW+ L+ F+++
Subjt: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
Query: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
A++ K++L KKG+L + DY LK++N+VD L G KIS +DH+ I GL +Y++ + + + + ++++ +LL QESRI +N+ I D S
Subjt: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
Query: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
PS+ T + G +AS+ +SN R G+G + R W NNKPQCQLC R GH V +CYYRF++ F GP+ N Q
Subjt: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
Query: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAGTLVDGL------YQFLLEKA-----------
+ +NF ++ ++ +DN+WY DSGA++H+T +L+NL +++ + V VGNG G + + F+ K
Subjt: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAGTLVDGL------YQFLLEKA-----------
Query: ---------------------HPDTTKISNSTSAE-----------------------HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
HP + + + ++ H S ++ A PSK S T+ F LWHN
Subjt: ---------------------HPDTTKISNSTSAE-----------------------HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
Query: -------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERK
RFTWIY L K+EAFQ+F FK+ VE LG I +Q+D G E+R FT +L ++GI HR +CPYT +QNG+ ERK
Subjt: -------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERK
Query: HRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKC
HR IVE G+ LL+ ASL ++WD+AF TSVYLINRLPT V+ SPLE L KP Y LK FGC+CYP LRP+NHHK++ RS+PC FLGYS HKGYKC
Subjt: HRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKC
Query: LASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
L+ +G + ISR+V+FDE FP ++ + + S ST++ C T ++P M L + S TS +PS
Subjt: LASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
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| TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.3e-149 | 39.61 | Show/hide |
Query: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
M S S+ E SS +I GNKI+ +KL++D FLLWK QILT L + L++ L+ +SE PSKYL + +SS PN AY W RQD LI +
Subjt: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
Query: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
WLLGSMS +L++ML C++A+E+W LQ FSSR +A+ M K+KL +KKG++ L++YFLK+ VDAL + + +S +DH+L ILAGLG++Y S ++V
Subjt: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
Query: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
I+ + ++P +Q+V SLL TQES+ + + ++PSVN+ TQT K Q + S N++ G G +NR N NKPQCQ+C + G++
Subjt: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
Query: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
RC++R+ P +NS+G +S + N P M+A+V DLN D++WYPDSGA+NH+T+ LSNL+IG+EY G N++ NG+
Subjt: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
Query: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
G L DGLY+F +E +H TK
Subjt: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
Query: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
I NS+ A SH L+ P +L DLW ++R+T
Subjt: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
Query: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
WIYFL SK++AF F+ FKT VEK LG+SI LQTD G+EF+PF PFL HGIEHR TCPYTSKQN IVERKHR I+EMGLTLLS A+L L FWD+AFST
Subjt: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
Query: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
SVYLINRLPT V+ +SPLEKL KP++ L+ FGC CYPYLRPY HK+ RS PC FLGYS+ HKGYKCLAS G+++ISR+VLFDE FP + F
Subjt: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
Query: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
++ S P V P + +P+ +N N D HT +D
Subjt: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.5e-118 | 33.67 | Show/hide |
Query: IINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRI
+I+P +++ TM+L++DNFL+WK QI +RG+GL+ L ++P K +T+ +PN + + RQD L+I+WLL S+ ++ L +++ C +A EVW
Subjt: IINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRI
Query: LQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIAR
+ F+S++ A++M KS++++LKK L + DY K+KN D L AG KIS DH+L I+ GLG EY+S + VI+ K +P LQ V S L E RIA
Subjt: LQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIAR
Query: NLSINPDGSIPSVNLTTQTGPKQQQASSG-DSNNRKNSNGKGNN--NRRSWNNNN-----------KPQCQLCKRFGHTVQRCYYRFERWFQGPNTNSNG
+S N D S+ + + GP S+G S+ +N N G N R S+ +N KPQCQLC +FGHTV RC+YR++ F G N +NG
Subjt: NLSINPDGSIPSVNLTTQTGPKQQQASSG-DSNNRKNSNGKGNN--NRRSWNNNN-----------KPQCQLCKRFGHTVQRCYYRFERWFQGPNTNSNG
Query: QQSSSVLGPP--------------------PSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA---------
+ VLG + +N M A+V + ++ W+PDSGA+NHVT+DL NL G EY G++++++GNG
Subjt: QQSSSVLGPP--------------------PSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA---------
Query: --------------------------------------------------------------GTLVDGLYQFLLEK------------------------
G L GLYQF L K
Subjt: --------------------------------------------------------------GTLVDGLYQFLLEK------------------------
Query: -AHPDTTKISNSTSAEH-------------TSHVLSTEAQPSKLSCTT----------------------------------VFDLW-------------
H D + T++ S +++ +K+ +T V DLW
Subjt: -AHPDTTKISNSTSAEH-------------TSHVLSTEAQPSKLSCTT----------------------------------VFDLW-------------
Query: -------HNRFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHAS
++R+TW+YFL +K++ + F +FK E G + QTD G EFR + + +GI HR +CP+TSKQNGI+ERKHR IVE+GLTLL+ AS
Subjt: -------HNRFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHAS
Query: LSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFD
L L++W DAFST+V+LINRLPT V+ Q P E L KP+Y LK FGCLC+P+LRPYN HK++ RS PC FLGYSS HKGYKCL G+++ISR+V+FD
Subjt: LSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFD
Query: ETKFPSSKFLD------PQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPA------MTLNNHDSDHT
ET+FP + L S V P +P++ + S+S ++S PT + + ++ + + L+N DS T
Subjt: ETKFPSSKFLD------PQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPA------MTLNNHDSDHT
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| A0A438H844 Retrovirus-related Pol polyprotein from transposon RE1 | 8.5e-118 | 34.84 | Show/hide |
Query: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
KLD NFL+W+ QILTTLRGH L+H L E S +PS++L++ D ++ N + W +QD LI++WLL S++++LL+ M+ C+T+ +VW+ L+ F+++
Subjt: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
Query: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
A++ K++L KKG+L + DY LK++N+VD L G KIS +DH+ I GL +Y++ + + + + ++++ LL QESRI +N+ I D S
Subjt: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
Query: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
PS+ T + G +AS+ +SN R G+G + R SW NNKPQCQLC R GH V +CYYRF++ F GP+ N Q
Subjt: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
Query: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAG-------------TLVDGLYQFLLEKAH-PD
+ +NF + ++ +DN+WYPDSGA++H+T +L+NL +++ + V VGNG G + + L + H P+
Subjt: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAG-------------TLVDGLYQFLLEKAH-PD
Query: TTK--------------------------------------------ISNSTSAE---HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
TK + ++T + H S ++ A PSK S T+ F LWHN
Subjt: TTK--------------------------------------------ISNSTSAE---HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
Query: -------------------------------------------------------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEK
RFTWIY L K+EAFQ+F FK+ VE
Subjt: -------------------------------------------------------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEK
Query: LLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLG
LG I +Q+D G E+R FT +L ++GI HR +CPYT +QNG+ ERKHR IVE G+ LL+ ASL ++WD+AF TSVYLINRLPT V+ SPLE L
Subjt: LLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLG
Query: FKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTA
KP Y LK FGC+CYP LRP+NHHK++ RS+PC FLGYS HKGYKCL+ +G + ISR+V+FDE FP F QS + S ST+
Subjt: FKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTA
Query: VSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
+ C T ++P M L + S TS +PS
Subjt: VSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
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| A0A438J300 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.7e-123 | 36.08 | Show/hide |
Query: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
KLD NFL+W+ QILTTLRGH L+H L E S +PS++L++ D ++ N + W +QD LI++WLL S++++LL+ M+ C+T+ +VW+ L+ F+++
Subjt: KLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-IPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNV
Query: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
A++ K++L KKG+L + DY LK++N+VD L G KIS +DH+ I GL +Y++ + + + + ++++ +LL QESRI +N+ I D S
Subjt: ARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSI
Query: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
PS+ T + G +AS+ +SN R G+G + R W NNKPQCQLC R GH V +CYYRF++ F GP+ N Q
Subjt: PSVN---LTTQTGPK--QQQASSGDSNNRK---------------NSNGKGNNNRRSWNNNNKPQCQLCKRFGHTVQRCYYRFERWFQGPN-TNSNGQQS
Query: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAGTLVDGL------YQFLLEKA-----------
+ +NF ++ ++ +DN+WY DSGA++H+T +L+NL +++ + V VGNG G + + F+ K
Subjt: SSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGAGTLVDGL------YQFLLEKA-----------
Query: ---------------------HPDTTKISNSTSAE-----------------------HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
HP + + + ++ H S ++ A PSK S T+ F LWHN
Subjt: ---------------------HPDTTKISNSTSAE-----------------------HTSHVLSTEAQPSK-----LSCTTVFDLWHN-----------
Query: -------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERK
RFTWIY L K+EAFQ+F FK+ VE LG I +Q+D G E+R FT +L ++GI HR +CPYT +QNG+ ERK
Subjt: -------------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERK
Query: HRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKC
HR IVE G+ LL+ ASL ++WD+AF TSVYLINRLPT V+ SPLE L KP Y LK FGC+CYP LRP+NHHK++ RS+PC FLGYS HKGYKC
Subjt: HRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKC
Query: LASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
L+ +G + ISR+V+FDE FP ++ + + S ST++ C T ++P M L + S TS +PS
Subjt: LASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLNNHDSDHTSLSNDPS
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| A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.1e-149 | 39.61 | Show/hide |
Query: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
M S S+ E SS +I GNKI+ +KL++D FLLWK QILT L + L++ L+ +SE PSKYL + +SS PN AY W RQD LI +
Subjt: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
Query: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
WLLGSMS +L++ML C++A+E+W LQ FSSR +A+ M K+KL +KKG++ L++YFLK+ VDAL + + +S +DH+L ILAGLG++Y S ++V
Subjt: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
Query: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
I+ + ++P +Q+V SLL TQES+ + + ++PSVN+ TQT K Q + S N++ G G +NR N NKPQCQ+C + G++
Subjt: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
Query: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
RC++R+ P +NS+G +S + N P M+A+V DLN D++WYPDSGA+NH+T+ LSNL+IG+EY G N++ NG+
Subjt: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
Query: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
G L DGLY+F +E +H TK
Subjt: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
Query: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
I NS+ A SH L+ P +L DLW ++R+T
Subjt: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
Query: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
WIYFL SK++AF F+ FKT VEK LG+SI LQTD G+EF+PF PFL HGIEHR TCPYTSKQN IVERKHR I+EMGLTLLS A+L L FWD+AFST
Subjt: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
Query: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
SVYLINRLPT V+ +SPLEKL KP++ L+ FGC CYPYLRPY HK+ RS PC FLGYS+ HKGYKCLAS G+++ISR+VLFDE FP + F
Subjt: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
Query: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
++ S P V P + +P+ +N N D HT +D
Subjt: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
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| A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.1e-149 | 39.61 | Show/hide |
Query: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
M S S+ E SS +I GNKI+ +KL++D FLLWK QILT L + L++ L+ +SE PSKYL + +SS PN AY W RQD LI +
Subjt: MESHSTEKSSSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSK-----IPNLAYDHWVRQDSLIIA
Query: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
WLLGSMS +L++ML C++A+E+W LQ FSSR +A+ M K+KL +KKG++ L++YFLK+ VDAL + + +S +DH+L ILAGLG++Y S ++V
Subjt: WLLGSMSNSLLSEMLECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNV
Query: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
I+ + ++P +Q+V SLL TQES+ + + ++PSVN+ TQT K Q + S N++ G G +NR N NKPQCQ+C + G++
Subjt: ITEKDETPPLQKVYSLLFTQESRIARNLSINPDGSIPSVNLTTQTGPK---------QQQASSGDSNNRKNSNGKGNNNRRSWNNNNKPQCQLCKRFGHT
Query: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
RC++R+ P +NS+G +S + N P M+A+V DLN D++WYPDSGA+NH+T+ LSNL+IG+EY G N++ NG+
Subjt: VQRCYYRFERWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA--------
Query: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
G L DGLY+F +E +H TK
Subjt: ---------------------------------------------------------------GTLVDGLYQFLLEKAHP------DTTK----------
Query: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
I NS+ A SH L+ P +L DLW ++R+T
Subjt: --------------------------ISNSTS-----------------AEHTSHVLSTEAQPSKLSCTTVFDLW--------------------HNRFT
Query: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
WIYFL SK++AF F+ FKT VEK LG+SI LQTD G+EF+PF PFL HGIEHR TCPYTSKQN IVERKHR I+EMGLTLLS A+L L FWD+AFST
Subjt: WIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFST
Query: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
SVYLINRLPT V+ +SPLEKL KP++ L+ FGC CYPYLRPY HK+ RS PC FLGYS+ HKGYKCLAS G+++ISR+VLFDE FP + F
Subjt: SVYLINRLPT-VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCLASSGKVYISRNVLFDETKFPSSKFLDP
Query: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
++ S P V P + +P+ +N N D HT +D
Subjt: QSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEISPTVPAMTLN-NHDSDHTSLSND
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 6.6e-19 | 30.63 | Show/hide |
Query: PSKLSCTTVFDLWHNRFTW---IYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEF--RPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIV
P L F ++ ++FT Y + K++ F +F+ F E ++ L DNG E+ F GI + T P+T + NG+ ER R I
Subjt: PSKLSCTTVFDLWHNRFTW---IYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEF--RPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIV
Query: EMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT---VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCL-A
E T++S A L FW +A T+ YLINR+P+ V +P E KP K L+ FG Y +++ K + +S +F+GY G+K A
Subjt: EMGLTLLSHASLSLEFWDDAFSTSVYLINRLPT---VVHQLSPLEKLLGFKPDYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCL-A
Query: SSGKVYISRNVLFDETKFPSSK
+ K ++R+V+ DET +S+
Subjt: SSGKVYISRNVLFDETKFPSSK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.3e-30 | 34.15 | Show/hide |
Query: NRFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEF--RPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFW
+R W+Y L +K + FQ+F+ F VE+ GR + RL++DNG E+ R F + +HGI H T P T + NG+ ER +R IVE ++L A L FW
Subjt: NRFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEF--RPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFW
Query: DDAFSTSVYLINRLPTVVHQLSPLEKLLGFKP-DYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCL-ASSGKVYISRNVLFDETKFP
+A T+ YLINR P+V E++ K Y LK FGC + ++ K++ +S+PC+F+GY GY+ KV SR+V+F E++
Subjt: DDAFSTSVYLINRLPTVVHQLSPLEKLLGFKP-DYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCL-ASSGKVYISRNVLFDETKFP
Query: SSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEIS
++ D V +P V ++ + + PT A T E+S
Subjt: SSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATVTVPEIS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.2e-75 | 27.78 | Show/hide |
Query: SSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEM
+ E+ +++ ++ +N N KL N+L+W Q+ G+ L LD + +P + D++ N Y W RQD LI + +LG++S S+ +
Subjt: SSEIEVSSQAMKIINPGNKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEM
Query: LECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVY
TA ++W L+ +++ + + L+++L+ KG ++DY + D L G+ + H++ V ++L L EY ++ I KD P L +++
Subjt: LECETAREVWRILQNRFSSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVY
Query: SLLFTQESRIARNLSINPDGSIP-SVNLTTQTGPKQQQASSGDSNNRKNSNGKGNNNRRSW----------NNNNKP---QCQLCKRFGHTVQRCYYRFE
L ES+I L+++ IP + N + ++ + N + N NNN + W NN +KP +CQ+C GH+ +RC
Subjt: SLLFTQESRIARNLSINPDGSIP-SVNLTTQTGPKQQQASSGDSNNRKNSNGKGNNNRRSW----------NNNNKP---QCQLCKRFGHTVQRCYYRFE
Query: RWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA-----------------
Q ++ N QQ PPS QP N + N+W DSGA++H+T+D +NL++ Y G + V V +G+
Subjt: RWFQGPNTNSNGQQSSSVLGPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA-----------------
Query: ---------------------------------------------------GTLVDGLYQFLLEKAHPDTTKISNSTSAEHTS-HVLSTEAQPS------
G D LY++ + + P + S S+ A H+S H PS
Subjt: ---------------------------------------------------GTLVDGLYQFLLEKAHPDTTKISNSTSAEHTS-HVLSTEAQPS------
Query: -------------KLSCTTVF-------------------------DLWHN-------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLG
LSC+ D+W + R+TW+Y L K++ + F FK +E
Subjt: -------------KLSCTTVF-------------------------DLWHN-------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLG
Query: RSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPTVVHQL-SPLEKLLGFKP
I +DNG EF + HGI H + P+T + NG+ ERKHR IVE GLTLLSHAS+ +W AF+ +VYLINRLPT + QL SP +KL G P
Subjt: RSILRLQTDNGSEFRPFTPFLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPTVVHQL-SPLEKLLGFKP
Query: DYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCL-ASSGKVYISRNVLFDETKFPSSKFLDPQSPVL------------YPTVPIMVP
+Y L+ FGC CYP+LRPYN HK++ +S C+FLGYS Y CL + ++YISR+V FDE FP S +L SPV + T+P P
Subjt: DYKLLKTFGCLCYPYLRPYNHHKIEPRSLPCLFLGYSSIHKGYKCL-ASSGKVYISRNVLFDETKFPSSKFLDPQSPVL------------YPTVPIMVP
Query: ITYGKSLSTAVSCPTDATVTVPEISPTVP----AMTLNNHDSDHTS
+ A SC P SP+ P ++ +N DS +S
Subjt: ITYGKSLSTAVSCPTDATVTVPEISPTVP----AMTLNNHDSDHTS
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.0e-71 | 28.33 | Show/hide |
Query: NKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRF
N KL N+L+W Q+ G+ L LD + +P + D+ N Y W RQD LI + +LG++S S+ + TA ++W L+ +
Subjt: NKITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRF
Query: SSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSIN
++ + + L+ F+ D L G+ + H++ V ++L L +Y ++ I KD P L +++ L +ES++ L++N
Subjt: SSRNVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSIN
Query: PDGSIP-SVNLTT--QTGPKQQQASSGDSNNRKNSNGKGN------NNRRSWNNNNKP---QCQLCKRFGHTVQRCYYRFERWFQGPNTNSNGQQSSSVL
+P + N+ T T + Q + GD+ N N+N + N + RS N KP +CQ+C GH+ +RC + FQ + +N QQS+S
Subjt: PDGSIP-SVNLTT--QTGPKQQQASSGDSNNRKNSNGKGN------NNRRSWNNNNKP---QCQLCKRFGHTVQRCYYRFERWFQGPNTNSNGQQSSSVL
Query: GPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA------------------------------------
P QP N V N N+W DSGA++H+T+D +NL+ Y G + V + +G+
Subjt: GPPPSGQNFQQPPMNALVVQNDLNKDNHWYPDSGASNHVTNDLSNLAIGTEYQGDNRVNVGNGA------------------------------------
Query: --------------------------------GTLVDGLYQFLLEKAHPDTTKISNSTSAEHTS--------------HVLSTEAQP------SKLSCTT
G D LY++ + + + S + A H+S V+S + P LSC+
Subjt: --------------------------------GTLVDGLYQFLLEKAHPDTTKISNSTSAEHTS--------------HVLSTEAQP------SKLSCTT
Query: VF-------------------------DLWHN-------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTP
F D+W + R+TW+Y L K++ F +FK+ VE I L +DNG EF
Subjt: VF-------------------------DLWHN-------------------RFTWIYFLTSKTEAFQIFKLFKTYVEKLLGRSILRLQTDNGSEFRPFTP
Query: FLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPTVVHQL-SPLEKLLGFKPDYKLLKTFGCLCYPYLRPY
+L HGI H + P+T + NG+ ERKHR IVEMGLTLLSHAS+ +W AFS +VYLINRLPT + QL SP +KL G P+Y+ LK FGC CYP+LRPY
Subjt: FLKTHGIEHRFTCPYTSKQNGIVERKHRKIVEMGLTLLSHASLSLEFWDDAFSTSVYLINRLPTVVHQL-SPLEKLLGFKPDYKLLKTFGCLCYPYLRPY
Query: NHHKIEPRSLPCLFLGYSSIHKGYKCL-ASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATV-TVPEISPTVPA
N HK+E +S C F+GYS Y CL +G++Y SR+V FDE FP + T V + + +A + P+ T+ T P + P P
Subjt: NHHKIEPRSLPCLFLGYSSIHKGYKCL-ASSGKVYISRNVLFDETKFPSSKFLDPQSPVLYPTVPIMVPITYGKSLSTAVSCPTDATV-TVPEISPTVPA
Query: MTLNNHDSDHTSLSNDPSC
+ + S S P C
Subjt: MTLNNHDSDHTSLSNDPSC
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 2.4e-08 | 25.56 | Show/hide |
Query: ITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSS
I + DEDN++ WK++ + LR +D P + + Y W + +++++ WL+ SM++ LL ++ ETA ++W L+ F
Subjt: ITTMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECETAREVWRILQNRFSS
Query: RNVARIMDLKSKLELLKKGNLKLEDYFLKVKNL
+I L+ +L L++G +E+YF K+ +
Subjt: RNVARIMDLKSKLELLKKGNLKLEDYFLKVKNL
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| AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 7.8e-15 | 23.13 | Show/hide |
Query: MKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYD-HWVRQDSLIIAWLLGSMS-NSLLSEMLECETAREVWRILQNRFSSR
+ ++E N+ W+ LT + H+ D + +P A D +W ++D ++ L G+++ + T+R++W ++N+F +
Subjt: MKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYD-HWVRQDSLIIAWLLGSMS-NSLLSEMLECETAREVWRILQNRFSSR
Query: NVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINP--
AR + L S+L G++++ DY+ K+K L D+L ++ + V+ +L GL ++D+ +NVI + P ++L +E R+ R + NP
Subjt: NVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIARNLSINP--
Query: --DGSIPSVNLTTQTGPKQQQASSGDSNNRKNSNGKGNN------------NRRSWNNNNKPQCQLCKRFGHTVQRCYYRFER-WFQGPNTNSNGQQSSS
S +V ++ P SG + G+GNN N ++N+ N+P Q Y + W P N+NG
Subjt: --DGSIPSVNLTTQTGPKQQQASSGDSNNRKNSNGKGNN------------NRRSWNNNNKPQCQLCKRFGHTVQRCYYRFER-WFQGPNTNSNGQQSSS
Query: VLGPPPS
+LGP P+
Subjt: VLGPPPS
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| AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 8.3e-17 | 26.77 | Show/hide |
Query: TMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECE-TAREVWRILQNRFSSR
T+ L++ N+ +W+ T G+ H+D G S+ P + W +D L+ W+ G++++SLL +++ TAR++W L+N F
Subjt: TMKLDEDNFLLWKLQILTTLRGHGLKHHLDEDSEIPSKYLTNGDSSKIPNLAYDHWVRQDSLIIAWLLGSMSNSLLSEMLECE-TAREVWRILQNRFSSR
Query: NVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIA-RNLSINPD
AR + +++L +L + +Y K+K+L D L IS V+ +L GL +YD +NVI K P + S+L +ESR++ ++ S
Subjt: NVARIMDLKSKLELLKKGNLKLEDYFLKVKNLVDALNAAGRKISHEDHVLKILAGLGTEYDSTVNVITEKDETPPLQKVYSLLFTQESRIA-RNLSINPD
Query: GSIPSVNLTTQTGPKQQQASSGDSNNRKNSNGKGNNNRRS---------WNNNN
+ PS++ T P+QQ+ + +N ++ G+G + +++ +NNNN
Subjt: GSIPSVNLTTQTGPKQQQASSGDSNNRKNSNGKGNNNRRS---------WNNNN
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