CuGenDBv2

Gene ID	Lag0023088
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotransposon gag protein
Genome location	chr7:43956287..43961616
RNA-Seq Expression	Lag0023088
Synteny	Lag0023088
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

1.9e-32

67.72

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR  VF R+SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+HS + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

6.4e-33

68.5

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+HS + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.2e-32

66.93

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K++S + SR+KRK S+ INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.2e-32

66.93

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+H+ + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.2e-32

66.93

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+H+ + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMQ5 Retrotransposon gag protein

2.0e-32

67.72

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR S F R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+ S +SSRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

A0A5A7SZJ7 Retrotransposon gag protein

9.1e-33

67.72

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR  VF R+SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+HS + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

A0A5A7TQ06 Retrotransposon gag protein

3.1e-33

68.5

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+HS + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

A0A5A7U974 Retrotransposon gag protein

1.5e-32

66.93

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTSVFDRIKP TTR SVF R+SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K++S + SR+KRK S+ INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

A0A5D3BBF9 Gag protease polyprotein

2.0e-32

66.93

Show/hide

Query:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD
        EEVDNS + +QRTS+FDRIKP TTR  VF R+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSD

Query:  KKLHSSISSRMKRKFSVLINTEGSLKV
         K+HS + SRMKRK SV INTEGSL V
Subjt:  KKLHSSISSRMKRKFSVLINTEGSLKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGAATAAATCGTTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACCTTGCAACTTCCTACTGCATCAACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACA
AAGGACTTCCGTCTTTGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCATAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCT
CCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGTCTCAAAGTAACAAACGATCAACCTAAAAGA
AAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATAC
GGAAGGTTCCTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTACCTTCCTCCAAGTTCGAAGGTTTTCATG
CGCTTTGTTGCAGTTCCTTCTCTCCAAACTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTGTTCTCGC
GCACTTTGCTGCCGTTCCTTCCTCTCAAATTCGAAGGTTCTCTCACGCGCTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGACGCTCCGCTGCAGTTCCT
TCTCTCTCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCGCTTCCGCTGCAGTTCATTCTCTCTCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCATTCC
TTCGCTTTCGCTGCAATTCCTTCTCTCCGAGTTCGAAGGTTCTCACGACGTTTCGTTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGACGCTCCGCTATAGTTCC
TTCTCTCCAAATTTGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCATCTCTCCAAGTTCGAAGGTGTTCTCGCGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAG
GTTCTCTCACGCGCTTCGTTACAGTTCCTTCTCTCCAAGTATGAAGGTTCTCTCCTCCAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAA
GGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTCTGAAGGTGCTCACGTGCTTCGGTAAAGTTCCTTCCTCCCAAGTTCGA
AGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGA
AAGTTTCAAAGGCCCTCACGCGCTGCGCTTCGTTGCAGTTCCTTCTTCCAAGTTCGAAGGTTCTCATGCGTTTCGATGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCAC
GCGCTGCTGCAGTTCCTGCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAA
GGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTGTTGCTACCTTCCTCCAAGTTCGAA
GTTCCTTCCTCCAAGTTTGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGCTTCTCT
CCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCC
TTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGAGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCTGCTGCGC
TTCATCTTCAAATGTTGGCAGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGAAGGCGAGTCGGGTC
TGGTGACCACCCCTGCAGGTTACTCAAATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCAC
CCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAG
TGATATCACTGCAAGCGAATTTGGGGGGTTCACCACCATTTCAAGGGGTCAGAATTTTGAAGCTCAAAGCCAGAGTCAGAGAATTCAGATAACTTCATCAAGATTGAAGA
CTGAAGACTCCTTCAAGATTGGAAGACTTCAAGCTCCAAGAGATCAACAAGCCAACCGACGATCAAGAAGATCACAAGTCAGCAGCGATCATCCAAGAAGATCAACAAGC
CAACCGATCGAACAGATCATCAAGCTAACCGACCATCAAGAAGATCAACAAGTCAGCAGGCTGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAAATCAT
CAAGCGACAGGCAGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATC
CAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACAGGCCGATCATCCAAGAGGATCAACAAGC
TAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLNKSFSKNFHKKEKKNLATSYCINVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFHRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKR
KMNNLELKLFDEVNSDKKLHSSISSRMKRKFSVLINTEGSLKVPTLRCCAASFSKFEGSDAALLPSSKFEGFHALCCSSFSPNSKFLPPSSKVFMRFVAVPSLQVRRCSR
ALCCRSFLSNSKVLSRASLQFLPPKFEGSHDAPLQFLLSPNSKVLTRSAAVPSLPLQFILSPNSKVLTRSAAFLRFRCNSFSPSSKVLTTFRCSSFLPNSKVLTTLRYSS
FSPNLKVFSRAPLQFHLSKFEGVLARFAAVPSSQIRRFSHALRYSSFSPSMKVLSSKSKVLTLLHCSSFLQVRRFSRCFVVVPSLQVRRFSPPSLKVLTCFGKVPSSQVR
SFFSLSSKVLTRFAAVPSSLSSKVLTRFAAVPSPKFESFKGPHALRFVAVPSSKFEGSHAFRCYLPPSSKVLSRAAAVPASKFEGSLTRFARSFSKFEGASLRCYFSKFE
GASLHCSFSKFEGASLYCSFSKFEGASLCCYLPPSSKFLPPSLKVPSRASLAPSPSSKALLSVATSPSSKALLSTAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFS
FSKFEGSPLLLFKCLAEVDVLVPLHLQMLVVDGVCCASSSNVGRNYSHQSDWSRQVVKSLQLNLMTTVEGESGLVTTPAGYSNHPIKWGLGLAGVHEANLVTTPAGYSDH
PIKWGLGLAGVHEGESGDYPCRLLRSPNEIGDWSSRSDITASEFGGFTTISRGQNFEAQSQSQRIQITSSRLKTEDSFKIGRLQAPRDQQANRRSRRSQVSSDHPRRSTS
QPIEQIIKLTDHQEDQQVSRLIIQEDQQANKPIQQIIKRQADPRDQQANRPIKKINKSAGRSSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKRSTSQQADHPRGSTS

Lag0023088 (gene) of Sponge gourd (AG-4) v1 genome