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Lag0023092 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023092
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr7:44094356..44097507
RNA-Seq ExpressionLag0023092
SyntenyLag0023092
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]8.2e-2736.23Show/hide
Query:  RNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHM---------------------
        R R +P    LT+KQ   ESL+DY+ RF  E LQVEG  D V+L A +SG++DE L  S  K +P   +EA  R + +M                     
Subjt:  RNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHM---------------------

Query:  ------------------TMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKG
                          + ++   +F++YTP T  +EQVL  I++  LLK PE++ +   +R+  +YC+FHRDH HAT++C  L++E+E LIR GYLK 
Subjt:  ------------------TMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKG

Query:  FVGTTEA
        +V   +A
Subjt:  FVGTTEA

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]2.5e-2333.18Show/hide
Query:  RNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHM---------------------
        R R +P    LT+KQ   ESL DY+ RF  E LQ+E   D V+L A +SG++DE L  S  K +P   +E   R + +M                     
Subjt:  RNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHM---------------------

Query:  ------------------TMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKG
                          + ++   +F++YTP T  LEQVL  I++  LLK PE++     +R+  +YC+FHRDH+HAT++   L++E+E LIR GYL+ 
Subjt:  ------------------TMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKG

Query:  FVGTTEA--RGHRQQIKVRAVPT
        +V   +A   G  ++   R + T
Subjt:  FVGTTEA--RGHRQQIKVRAVPT

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.4e-2333.33Show/hide
Query:  ARNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSP----RPMAEADK----------------------
        AR R KP    LTVKQ   E+L+DYI R+ NE+ QV+G+DDG+AL+ ++ GL+  +L  S+SK  P      +A A+K                      
Subjt:  ARNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSP----RPMAEADK----------------------

Query:  -----------------------RPRSHMTMRNQKTR----FDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPL
                               RP     +R+ + R    F  +T L    EQ+L  ++N  L + P  + ++P RRN NKYC FH+DH H T EC  L
Subjt:  -----------------------RPRSHMTMRNQKTR----FDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPL

Query:  RDEIEALIREGYLKGFVGTTEARGHRQQ
        +++IE+L+R+G L+ +V   E R   +Q
Subjt:  RDEIEALIREGYLKGFVGTTEARGHRQQ

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]1.1e-2336.89Show/hide
Query:  ARNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAE----------------------------A
        AR++Q P    L VKQG  ESLKD I RF  EV++VE + D VALT ++ GLQ  +   S++K+  R   E                            A
Subjt:  ARNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAE----------------------------A

Query:  DKRPRSHMTMRNQ--------------KTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREG
        +KR      ++N+              ++RF RYTPL    EQVL  I+N +LL++P+ +   P+RR+ +KYC +HRDH H   +C  L++EI++LI+ G
Subjt:  DKRPRSHMTMRNQ--------------KTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREG

Query:  YLKGFV
        YLK FV
Subjt:  YLKGFV

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]3.2e-2339.78Show/hide
Query:  LTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADK------------------RPRSHMT-----MRNQKT-
        LT++QG  ESL+ +I RF  E L V+  DD + L A  +G+  +  +  + +  P+ MAE  +                  RP+   T        +KT 
Subjt:  LTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADK------------------RPRSHMT-----MRNQKT-

Query:  ---RFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVG
           R   YTPL A L QVL  I++   LK PEK+  DP++RN NKYC FHRDH H T EC  L+ +IE LIR+G LK FVG
Subjt:  ---RFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVG

TrEMBL top hitse value%identityAlignment
A0A2N9F1B5 Ribonuclease H1.7e-2540.59Show/hide
Query:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAE------------ADKRPRSHMTM-----------
        +P  + L VKQ   E+L+ Y+ RF  E L V+G DD V LTA ISGLQ E  L SI K  P  M E            AD+    H T            
Subjt:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAE------------ADKRPRSHMTM-----------

Query:  -----RNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFV--GTTEAR--GHR
             R    RF+R+TPL A ++ +   I+N   LK P KL +DPD+R  +KYC FHRDH H T  C  L+ +IE LI++G L+ F+  G  E R  G R
Subjt:  -----RNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFV--GTTEAR--GHR

Query:  QQ
        QQ
Subjt:  QQ

A0A2N9FPT8 Reverse transcriptase domain-containing protein7.5e-2639.55Show/hide
Query:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHMTMRNQKTRFDRYTPLTASLEQVLAA
        +P  + L V+Q   E+L+ Y+ RF  E L V+G DD V LTA ISGLQ    L S+ K  P  M+E  K  R     R    RF+ +TPL A ++++   
Subjt:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHMTMRNQKTRFDRYTPLTASLEQVLAA

Query:  IQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVP
        I++   L+ P KL ++PD+R  +KYC FHRDH H T +C  L+ +IE LI++G L+ FV   +  G   Q + +  P
Subjt:  IQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVP

A0A2N9HHE1 Ribonuclease H5.7e-2639.11Show/hide
Query:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEA--DKRPRSHMTMRNQKTRFDRYTPLTASLEQVL
        +P  + L V+Q   E+L+ Y+ RF  E L V+G DD V LTA ISGLQ    L S+ K  P  M+E     + R     R    RF+ +TPL A ++++ 
Subjt:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEA--DKRPRSHMTMRNQKTRFDRYTPLTASLEQVL

Query:  AAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVP
          I++   L+ P KL ++PDRR  +KYC FHRDH H T +C  L+ +IE LI++G L+ FV   +  G   Q + +  P
Subjt:  AAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVP

A0A2N9IAR9 Ribonuclease H9.8e-2639.11Show/hide
Query:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEA--DKRPRSHMTMRNQKTRFDRYTPLTASLEQVL
        +P  + L V+Q   E+L+ Y+ RF  E L V+G DD V LTA ISGLQ    L S+ K  P  M+E     + R     R    RF+ +TPL A ++++ 
Subjt:  KPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEA--DKRPRSHMTMRNQKTRFDRYTPLTASLEQVL

Query:  AAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVP
          I++   L+ P KL ++PDRR  +KYC FHRDH H T +C  L+ +IE LI++G L+ FV   +  G   Q + +  P
Subjt:  AAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVP

A0A6J1DWY0 uncharacterized protein LOC1110252934.0e-2736.23Show/hide
Query:  RNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHM---------------------
        R R +P    LT+KQ   ESL+DY+ RF  E LQVEG  D V+L A +SG++DE L  S  K +P   +EA  R + +M                     
Subjt:  RNRQKPQINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHM---------------------

Query:  ------------------TMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKG
                          + ++   +F++YTP T  +EQVL  I++  LLK PE++ +   +R+  +YC+FHRDH HAT++C  L++E+E LIR GYLK 
Subjt:  ------------------TMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEKLGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKG

Query:  FVGTTEA
        +V   +A
Subjt:  FVGTTEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTTAGGTTCGTGGGTCTTTTGTGCGTAGGGAAGGACCAGAAAACCGATCTAGCGGAAGGCAGGACCAAAGGGTCGAGCCAACATGGCCCGACCCATACGGTCGG
CCCACTTGCGTGGGCCGAGCTCGGTCGCCTCCTTTTGGCCCCTGATGCCCCAGATCGCCCCGGTTCCGCCTGGTTCGTCCCGAAACACCTCCGGATTCTTGAAAACCCTA
GGAGGAAGAACAGGCATCGGAGGCAGTGTGGCCTACACCACAACAGTGTCCAGCGATTCTTGCTGGTTTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTATTG
GTGTCACGTGAAGGCCGGGTGAGTCCCCTGACCGGATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAGGGCTTGCCAGCTCAGATCGCGCATCGGTGGTGGTTC
CGTGAGCGCAAAGAGGACGACCAGTGGAAGAGCTGGAGGCCAAATCCGACATGAGCGCAAAGGAAGATGGAGGCCAGATGCGCAAAGGAAGATGGACGCCAGATCCGACA
TGAGCACTCTTCGCCTGATGGCCAAGGCCGAGCAGAAGCTCAATCGCAAAGAGGCCCGCAGAAGTTCGCCACTAAAGACAGCGCCAAGAGCCCGAAACCGTCAGAAGCCT
CAGATCAACTCGCTGACAGTAAAGCAGGGGCCTCGAGAAAGCTTGAAGGATTATATTAACAGATTTTGTAACGAAGTTTTGCAGGTAGAAGGCCATGACGATGGAGTTGC
CTTGACTGCTATGATTTCAGGTCTGCAGGATGAAAGACTGCTCAGCTCGATCAGCAAGAGCAGTCCTCGGCCAATGGCTGAGGCCGACAAGAGGCCAAGGAGCCACATGA
CTATGCGAAACCAAAAAACCAGATTCGACAGGTATACACCACTAACAGCTTCGCTAGAACAGGTCTTGGCCGCAATACAGAACACAAATCTGTTGAAACGCCCAGAAAAG
TTGGGATCAGACCCCGACAGGAGGAACATAAACAAATACTGCATGTTCCACAGAGACCACAGTCACGCAACCCGGGAATGCATACCATTGAGGGACGAGATAGAAGCCCT
AATCCGAGAAGGTTACCTCAAGGGGTTCGTGGGAACGACAGAAGCAAGAGGCCACCGCCAGCAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATATGAACAAT
TTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTTAGGTTCGTGGGTCTTTTGTGCGTAGGGAAGGACCAGAAAACCGATCTAGCGGAAGGCAGGACCAAAGGGTCGAGCCAACATGGCCCGACCCATACGGTCGG
CCCACTTGCGTGGGCCGAGCTCGGTCGCCTCCTTTTGGCCCCTGATGCCCCAGATCGCCCCGGTTCCGCCTGGTTCGTCCCGAAACACCTCCGGATTCTTGAAAACCCTA
GGAGGAAGAACAGGCATCGGAGGCAGTGTGGCCTACACCACAACAGTGTCCAGCGATTCTTGCTGGTTTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTATTG
GTGTCACGTGAAGGCCGGGTGAGTCCCCTGACCGGATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAGGGCTTGCCAGCTCAGATCGCGCATCGGTGGTGGTTC
CGTGAGCGCAAAGAGGACGACCAGTGGAAGAGCTGGAGGCCAAATCCGACATGAGCGCAAAGGAAGATGGAGGCCAGATGCGCAAAGGAAGATGGACGCCAGATCCGACA
TGAGCACTCTTCGCCTGATGGCCAAGGCCGAGCAGAAGCTCAATCGCAAAGAGGCCCGCAGAAGTTCGCCACTAAAGACAGCGCCAAGAGCCCGAAACCGTCAGAAGCCT
CAGATCAACTCGCTGACAGTAAAGCAGGGGCCTCGAGAAAGCTTGAAGGATTATATTAACAGATTTTGTAACGAAGTTTTGCAGGTAGAAGGCCATGACGATGGAGTTGC
CTTGACTGCTATGATTTCAGGTCTGCAGGATGAAAGACTGCTCAGCTCGATCAGCAAGAGCAGTCCTCGGCCAATGGCTGAGGCCGACAAGAGGCCAAGGAGCCACATGA
CTATGCGAAACCAAAAAACCAGATTCGACAGGTATACACCACTAACAGCTTCGCTAGAACAGGTCTTGGCCGCAATACAGAACACAAATCTGTTGAAACGCCCAGAAAAG
TTGGGATCAGACCCCGACAGGAGGAACATAAACAAATACTGCATGTTCCACAGAGACCACAGTCACGCAACCCGGGAATGCATACCATTGAGGGACGAGATAGAAGCCCT
AATCCGAGAAGGTTACCTCAAGGGGTTCGTGGGAACGACAGAAGCAAGAGGCCACCGCCAGCAGATCAAGGTAAGGGCGGTGCCAACCCACCGCTCGAGATATGAACAAT
TTTAG
Protein sequenceShow/hide protein sequence
MKFRFVGLLCVGKDQKTDLAEGRTKGSSQHGPTHTVGPLAWAELGRLLLAPDAPDRPGSAWFVPKHLRILENPRRKNRHRRQCGLHHNSVQRFLLVLQVTSSPASTNSLL
VSREGRVSPLTGFWHQQLAPSVGKRACQLRSRIGGGSVSAKRTTSGRAGGQIRHERKGRWRPDAQRKMDARSDMSTLRLMAKAEQKLNRKEARRSSPLKTAPRARNRQKP
QINSLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMISGLQDERLLSSISKSSPRPMAEADKRPRSHMTMRNQKTRFDRYTPLTASLEQVLAAIQNTNLLKRPEK
LGSDPDRRNINKYCMFHRDHSHATRECIPLRDEIEALIREGYLKGFVGTTEARGHRQQIKVRAVPTHRSRYEQF