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Lag0023111 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023111
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationchr7:44352907..44355334
RNA-Seq ExpressionLag0023111
SyntenyLag0023111
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007066 - RNA polymerase Rpb1, domain 3
IPR042102 - RNA polymerase Rpb1, domain 3 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148776.1 DNA-directed RNA polymerase III subunit 1 isoform X1 [Cucumis sativus]3.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

XP_008465290.2 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit 1 [Cucumis melo]3.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

XP_031736287.1 DNA-directed RNA polymerase III subunit 1 isoform X2 [Cucumis sativus]3.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

XP_038894318.1 DNA-directed RNA polymerase III subunit 1 isoform X1 [Benincasa hispida]3.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

XP_038894319.1 DNA-directed RNA polymerase III subunit 1 isoform X2 [Benincasa hispida]3.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

TrEMBL top hitse value%identityAlignment
A0A0A0LV87 DNA-directed RNA polymerase subunit1.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

A0A1S3CNX9 DNA-directed RNA polymerase subunit1.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

A0A5A7T651 DNA-directed RNA polymerase subunit1.8e-3795.18Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

A0A5D3DCE3 DNA-directed RNA polymerase subunit4.1e-3795.12Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL
        MKVYLNLTVKEKSYSK+KGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKL
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL

A0A6J1DR19 DNA-directed RNA polymerase4.1e-3793.98Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        MKVYLNLTVKEKSYSK+KGNE+ERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYS+LLRDYKAH+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

SwissProt top hitse value%identityAlignment
F4JXF9 DNA-directed RNA polymerase III subunit 12.8e-2773.49Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        ++VY+ L VKEK++   KG     ETMC NDG+VYFRNSELISGQ+GKATLGNGNKDGLYSILLRDY +H+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

O14802 DNA-directed RNA polymerase III subunit RPC12.4e-1042.22Show/hide
Query:  VYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLSTLQQAKETF
        V  NL  K K Y   KG     E +C ND +V  +NSEL+SG + K TLG+G+K+ ++ ILLRD+  + AA  M+RLA+L+ +  +   F
Subjt:  VYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLSTLQQAKETF

O94666 DNA-directed RNA polymerase III subunit rpc18.0e-1446.91Show/hide
Query:  KVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL
        KV +NL  K +S+S+IK    E   MCP DG++  RNSE+I+G V K+ +G+G KD L+ ++LRDY A  AA  + RL+K+
Subjt:  KVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL

Q6BI69 DNA-directed RNA polymerase III subunit RPC13.7e-1146.91Show/hide
Query:  VYLNLTVKEKSYS-KIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL
        V +NL  K K+Y+   KG   E   M PNDGFV  R S+++SG + K+TLG+G K  ++  +LRDY    AA  MNR+AKL
Subjt:  VYLNLTVKEKSYS-KIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL

Q86AQ5 DNA-directed RNA polymerase III subunit rpc11.8e-1347.5Show/hide
Query:  VYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL
        V  N   + ++YSK          MCP DG+VYFRNSEL+ G + K+ +G GNK+ L+ IL+RD+    AA CM RLAKL
Subjt:  VYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKL

Arabidopsis top hitse value%identityAlignment
AT5G60040.1 nuclear RNA polymerase C12.0e-2873.49Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        ++VY+ L VKEK++   KG     ETMC NDG+VYFRNSELISGQ+GKATLGNGNKDGLYSILLRDY +H+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS

AT5G60040.2 nuclear RNA polymerase C12.5e-2667.78Show/hide
Query:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKAT-------LGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS
        ++VY+ L VKEK++   KG     ETMC NDG+VYFRNSELISGQ+GKAT       LGNGNKDGLYSILLRDY +H+AA CMNRLAKLS
Subjt:  MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKAT-------LGNGNKDGLYSILLRDYKAHSAAACMNRLAKLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTCTATCTGAATCTTACAGTTAAGGAGAAAAGCTACAGTAAAATTAAAGGAAATGAGAAAGAGCGAGAAACTATGTGTCCTAATGATGGATTTGTCTACTTCCG
TAATAGTGAGCTAATATCAGGCCAAGTTGGGAAGGCTACTTTAGGCAATGGCAACAAGGATGGACTTTATTCTATTCTTCTTAGAGATTACAAGGCACATTCTGCTGCTG
CTTGTATGAATCGTCTTGCTAAGCTGAGCACACTCCAACAAGCCAAAGAAACTTTCCTTTCTTCCGAACCGACGAATGGAGGAGGAACTCTCGATCGTATCCCTACAATG
GCGGTGGCTCGCAAACTGAAACTCGAAGACCTCAAAGAAGAGACTCCAGACAGAGCGAGCAAACTCACAATTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTCTATCTGAATCTTACAGTTAAGGAGAAAAGCTACAGTAAAATTAAAGGAAATGAGAAAGAGCGAGAAACTATGTGTCCTAATGATGGATTTGTCTACTTCCG
TAATAGTGAGCTAATATCAGGCCAAGTTGGGAAGGCTACTTTAGGCAATGGCAACAAGGATGGACTTTATTCTATTCTTCTTAGAGATTACAAGGCACATTCTGCTGCTG
CTTGTATGAATCGTCTTGCTAAGCTGAGCACACTCCAACAAGCCAAAGAAACTTTCCTTTCTTCCGAACCGACGAATGGAGGAGGAACTCTCGATCGTATCCCTACAATG
GCGGTGGCTCGCAAACTGAAACTCGAAGACCTCAAAGAAGAGACTCCAGACAGAGCGAGCAAACTCACAATTCCATAG
Protein sequenceShow/hide protein sequence
MKVYLNLTVKEKSYSKIKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGLYSILLRDYKAHSAAACMNRLAKLSTLQQAKETFLSSEPTNGGGTLDRIPTM
AVARKLKLEDLKEETPDRASKLTIP