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Lag0023156 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0023156
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptioncold-inducible RNA-binding protein B-like
Genome locationchr7:45041687..45042341
RNA-Seq ExpressionLag0023156
SyntenyLag0023156
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0017069 - snRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607208.1 Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3491.86Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        F S LSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKT  HGVDA SR
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

XP_008457543.1 PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]4.1e-3387.06Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKS
        F S LSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD  S
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKS

XP_022949004.1 cold-inducible RNA-binding protein B-like [Cucurbita moschata]7.5e-3593.02Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        F S LSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

XP_023523197.1 cold-inducible RNA-binding protein-like [Cucurbita pepo subsp. pepo]3.2e-3390.7Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        F S LSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQS  EAKKAL AMNGRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

XP_038895198.1 small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]1.4e-3695.35Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        F S LSSYTTIERLE+LFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDA SR
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

TrEMBL top hitse value%identityAlignment
A0A0A0KQ26 Cold-inducible RNA binding protein8.7e-2986.84Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKT
        F S LSSYTT+ERL+ LFSPFGS+SEARLIRDPKT+RPKGFGFVTFQSP EAKKAL+AM+GRIVDGRLIFVEFAKT
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKT

A0A1S3C5W5 cold-inducible RNA-binding protein B2.0e-3387.06Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKS
        F S LSSYTTIERL++LFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD  S
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKS

A0A6J1DM71 small RNA-binding protein 11, chloroplastic8.7e-2982.72Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGV
        F S LSSYTTIERL++LFS FG+VSEARL+RDPKT RPKGFGFVTFQSPVEA+KA++AMNGRIVDGRLIFVEFA TR  GV
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGV

A0A6J1GBJ9 cold-inducible RNA-binding protein B-like3.6e-3593.02Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        F S LSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

A0A6J1KF23 cold-inducible RNA-binding protein B-like3.6e-3593.02Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        F S LSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSP EAKKALQAM+GRIVDGRLIFVEFAKTR HGVDA SR
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

SwissProt top hitse value%identityAlignment
P60826 Cold-inducible RNA-binding protein6.4e-1350Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        F  GLS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++  +AK A+ AMNG+ VDGR I V+ A
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q14011 Cold-inducible RNA-binding protein6.4e-1350Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        F  GLS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF++  +AK A+ AMNG+ VDGR I V+ A
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q28IQ9 Cold-inducible RNA-binding protein9.9e-1450Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        F  GL+  TT E LE +FS +G V+E  +++D +++R +GFGFVTF++P +AK A+ AMNG+ VDGR I V+ A
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q9DED4 Cold-inducible RNA-binding protein B7.6e-1450Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA
        F  GL+  T  E LE +FS +G +SE  +++D +T+R +GFGFVTF++P +AK A+ AMNG+ VDGR I V+ A
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFA

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic2.9e-1344.19Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        + SGLS  TT + L   F  FG++    ++ D    RPKGF F+ +++  EA KA+Q M+G+ +DGR+IFVE AKTR     AK R
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.1e-1444.19Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR
        + SGLS  TT + L   F  FG++    ++ D    RPKGF F+ +++  EA KA+Q M+G+ +DGR+IFVE AKTR     AK R
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.1e-1346.75Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR
        F SGLS  TT E+L+  F+ FG + +AR+I D  + R KGFGFVT+ +  +A+KA   MN + +DG +IFV+ A+ R
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTR

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.1e-2366.67Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK
        F S LS+YTT + L  LFSPFG + EARLIRD +TQRPKGFGF+TF S  +A+KAL++++G+IVDGRLIFVE AK
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein7.8e-1448.72Show/hide
Query:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR
        F  GLS  TT + L   FS  G V EA+++ D  + R KGFGFVTF S  EA+KAL   NG+ ++GR IFV++AK ++
Subjt:  FFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRR

AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.3e-2064.38Show/hide
Query:  SGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK
        SGLS+YTT + L  LF+PF     ARLI+D +TQRPKGFGF+TF+S  +A+KAL+A+NG+IV+GRLIFVE AK
Subjt:  SGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTCATCAAACCTCAAATTGATCATTTTTTTTTCTTCTCAGGACTGTCATCATACACAACGATCGAACGCCTCGAGACTCTGTTTTCACCCTTCGGTTCAGTCTC
TGAAGCTCGGCTAATCCGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGCTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGGCACTTCAAGCCATGAATGGTC
GGATAGTTGATGGAAGGTTGATTTTCGTTGAATTTGCGAAGACTAGGAGACATGGGGTAGATGCTAAATCTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTCATCAAACCTCAAATTGATCATTTTTTTTTCTTCTCAGGACTGTCATCATACACAACGATCGAACGCCTCGAGACTCTGTTTTCACCCTTCGGTTCAGTCTC
TGAAGCTCGGCTAATCCGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGCTTTGTCACATTTCAATCCCCGGTTGAGGCGAAGAAGGCACTTCAAGCCATGAATGGTC
GGATAGTTGATGGAAGGTTGATTTTCGTTGAATTTGCGAAGACTAGGAGACATGGGGTAGATGCTAAATCTAGATAA
Protein sequenceShow/hide protein sequence
MFLIKPQIDHFFFFSGLSSYTTIERLETLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAKSR